Part of scaffold_2 (Scaffold)

For more information consult the page for scaffold_2 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

VAPB ENSTTRG00000002769 (Bottlenosed dolphin)

Gene Details

VAMP (vesicle-associated membrane protein)-associated protein B and C

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002596, Bottlenosed dolphin)

Protein Percentage 90.12%
cDNA percentage 89.92%
Ka/Ks Ratio 0.19201 (Ka = 0.0065, Ks = 0.0337)

VAPB ENSBTAG00000017424 (Cow)

Gene Details

Vesicle-associated membrane protein-associated protein B

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000023164, Cow)

Protein Percentage 96.51%
cDNA percentage 93.8%
Ka/Ks Ratio 0.09054 (Ka = 0.0191, Ks = 0.2112)

VAPB  (Minke Whale)

Gene Details

VAMP (vesicle-associated membrane protein)-associated protein B and C

External Links

Gene match (Identifier: BACU018659, Minke Whale)

Protein Percentage 98.84%
cDNA percentage 99.22%
Ka/Ks Ratio 0.39327 (Ka = 0.0055, Ks = 0.0139)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 615 bp    Location:132565..121779   Strand:-
>bmy_00226
ATGTTACAGCCTTTCGATTATGATCCCAATGAGAAAAGTAAACACAAGTTTATGGTTCAGTCTATGTTTGCTCCAACTGACACTTCTGATATGGAAGCAGTATGGAAGGAGGCAAAACCGGAAGACCTTATGGATTCAAAACTTAGATGTGTGTTTGAATTGCCAGCAGAAAATGATAAACCACATGATGTAGAAATAAATAAAATTATATCCACAACTGCATCAAAGACAGAAACACCAACAGTGTCTAAAGCTCTGAGTTCTTCTTTGGATGACACTGAAGTTAAGAAGGTGATGGAAGAATGTAAGCGGCTGCAGAGTGAAGTTCAGAGGCTGCGGGAAGAGAACAAGCAGTTCAAGGGTAGCCGGGGAGGCCCCGACACGAGTACTGATAACCAGTGTGATGAGTGGTGCCACCGAGATGGCCATGAGTGTCACGGAAAGTCTGCTCGATGGGAAGAAGATGGACTTCGGATGAGAAAGGCAGCGCAGAGCAACAGCCCCGTTCCTGCGTTAGCCGCGGCTGGGAAGGAGGAGGGCCTCAGCGCCCGGCTACTCGCGCTGGTGGTTTTGTTCTTCATCGTTGGTGTAATCATAGGGAAGATCGCCTTGTAG

Related Sequences

bmy_00226T0 Protein

Length: 205 aa      View alignments
>bmy_00226T0
MLQPFDYDPNEKSKHKFMVQSMFAPTDTSDMEAVWKEAKPEDLMDSKLRCVFELPAENDKPHDVEINKIISTTASKTETPTVSKALSSSLDDTEVKKVMEECKRLQSEVQRLREENKQFKGSRGGPDTSTDNQCDEWCHRDGHECHGKSARWEEDGLRMRKAAQSNSPVPALAAAGKEEGLSARLLALVVLFFIVGVIIGKIAL*