Part of scaffold_3 (Scaffold)

For more information consult the page for scaffold_3 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PDLIM3 ENSTTRG00000012162 (Bottlenosed dolphin)

Gene Details

PDZ and LIM domain 3

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011524, Bottlenosed dolphin)

Protein Percentage 77.07%
cDNA percentage 82.28%
Ka/Ks Ratio 0.52676 (Ka = 0.1701, Ks = 0.3229)

PDLIM3 ENSBTAG00000017183 (Cow)

Gene Details

PDZ and LIM domain protein 3

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000022835, Cow)

Protein Percentage 96.57%
cDNA percentage 94.61%
Ka/Ks Ratio 0.10374 (Ka = 0.0169, Ks = 0.1634)

PDLIM3  (Minke Whale)

Gene Details

PDZ and LIM domain 3

External Links

Gene match (Identifier: BACU007192, Minke Whale)

Protein Percentage 79.02%
cDNA percentage 82.44%
Ka/Ks Ratio 0.45552 (Ka = 0.1593, Ks = 0.3498)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 618 bp    Location:4483532..4494188   Strand:+
>bmy_00302
GAGTTCAAACCCATTGGTGCCGGGTACAACAGAAGGGCCCAGCCTTTTGTTGCAGCAGCAAACATTGATGACAAAAGACAGGTAGTGAGCGCTTCCTATAACTCACCCATTGGGCTCTATTCAACCAGCAATATACAAGATGCGCTTCACGGGCAGCTGCGGGGGCTCATTCCTAGCTCACCTCAAAATGAACCCGCGGCCTCCCCAGTGCCCCCCCAGTCGGATGTGTACCGGATGCTCCACGACAATCGGAATGAACCTACTCAGCCTCGCCAGTCAGGCTCCTTCAGGGTGCTCCAGGAACTAGTGAACGATGATGACCGTCCTGCTGGAACTCGGAGTGTGAGAGCTCCAGTTACAAAAGTCCACGGCGGTGCTGGCAGCACACAGAAGATGCCACTCTGTGACAAATGTGGGAGTGGCATTGTTGGTGCGGTTGTGAAGGCGAGGGACAAGCATCGGCATCCAGAGTGCTTCGTGTGTGCTGACTGTAACCTCAACCTCAAACAAAAGGGCTACTTCTTCGTGGAGGGGGAGCTGTACTGCGAAACCCACGCGCGGGCCCGCATGAGGCCCCCAGAGGGCTACGACACAGTCACTCTTTATCCCAAAGCTTAA

Related Sequences

bmy_00302T0 Protein

Length: 206 aa      View alignments
>bmy_00302T0
EFKPIGAGYNRRAQPFVAAANIDDKRQVVSASYNSPIGLYSTSNIQDALHGQLRGLIPSSPQNEPAASPVPPQSDVYRMLHDNRNEPTQPRQSGSFRVLQELVNDDDRPAGTRSVRAPVTKVHGGAGSTQKMPLCDKCGSGIVGAVVKARDKHRHPECFVCADCNLNLKQKGYFFVEGELYCETHARARMRPPEGYDTVTLYPKA*