Part of scaffold_4 (Scaffold)

For more information consult the page for scaffold_4 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SIX3 ENSBTAG00000027017 (Cow)

Gene Details

homeobox protein SIX3

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000038493, Cow)

Protein Percentage 98.48%
cDNA percentage 97.97%
Ka/Ks Ratio 0.05457 (Ka = 0.0061, Ks = 0.1112)

SIX3  (Minke Whale)

Gene Details

SIX homeobox 3

External Links

Gene match (Identifier: BACU013903, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.87%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.01)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1065 bp    Location:1887381..1883468   Strand:-
>bmy_00335
ATGCCCCCCAAAATCCGAGATCCTGGGGCGCAGCAGCCCGCCGGACCAGGGTCGGCGCGCGGTCAGTCCATGGTATTCCGCTCCCCCCTAGACCTCTATTCCTCCCACTTCTTGTTGCCAAACTTCGCCGATTCTCACCACCGCTCCCTACTTCTGGCGAGTAGCGGCGCCGGGAACGGTGCGGGAGGCGGCGGCGCGGGAGGCGGCGGCGGCGGGAACTGTGCGGGAGGCGGCGGTGCTGGCGGAGCAGGCGGCGGCGGCAGCGGCGGCGGCTCCAGGGCCCCCCCGGAAGAGTTGTCCATGTTCCAGCTGCCCACCCTCAACTTCTCGCCGGAGCAGGTGGCCAGCGTCTGCGAGACGCTGGAGGAGACGGGCGACATCGAGCGGCTGGGCCGCTTCCTCTGGTCGCTGCCCGTGGCCCCCGGGGCGTGCGAGGCCATCAACAAGCACGAGTCGATCCTGCGCGCGCGCGCCGTGGTCGCCTTCCACACGGGCAACTTCCGCGACCTCTACCACATCCTGGAGAACCACAAGTTCACCAAGGAGTCTCACGGCAAGCTGCAGGCCATGTGGCTCGAGGCGCACTACCAGGAGGCCGAGAAGCTGCGCGGCCGCCCGCTCGGCCCGGTGGACAAGTACCGCGTGCGCAAGAAGTTCCCGCTGCCGCGCACCATCTGGGACGGCGAGCAGAAGACGCATTGCTTCAAGGAGCGGACTCGGAGCCTGCTGCGGGAGTGGTACCTGCAGGACCCCTACCCCAACCCCAGCAAGAAACGCGAACTGGCGCAGGCCACCGGCCTCACTCCCACACAAGTAGGAAACTGGTTTAAGAACCGGAGGCAGCGCGACCGCGCCGCGGCGGCCAAGAACAGGCTCCAGCACCAGGCCATCGGACCGAGCGGCATGCGCTCTCTGGCCGAGCCCGGATGCCCCACGCACGGCTCGGCAGAGTCGCCGTCAACGGCGGCCAGTCCCACCACCAGCGTGTCCAGCCTGACGGAGCGCGCGGACACCGGCACCTCCATCCTCTCGGTAACCTCCAGCGACTCGGAATGTGATGTATGA

Related Sequences

bmy_00335T0 Protein

Length: 355 aa      View alignments
>bmy_00335T0
MPPKIRDPGAQQPAGPGSARGQSMVFRSPLDLYSSHFLLPNFADSHHRSLLLASSGAGNGAGGGGAGGGGGGNCAGGGGAGGAGGGGSGGGSRAPPEELSMFQLPTLNFSPEQVASVCETLEETGDIERLGRFLWSLPVAPGACEAINKHESILRARAVVAFHTGNFRDLYHILENHKFTKESHGKLQAMWLEAHYQEAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQKTHCFKERTRSLLREWYLQDPYPNPSKKRELAQATGLTPTQVGNWFKNRRQRDRAAAAKNRLQHQAIGPSGMRSLAEPGCPTHGSAESPSTAASPTTSVSSLTERADTGTSILSVTSSDSECDV*