Sequence detailsbmy_00359 (Coding sequence)

Part of scaffold_5 (SequenceType object (1))

For more information consult the page for scaffold_5 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRIM50 (Minke Whale)

Gene Details

tripartite motif containing 50

External Links

Gene match (Identifier: BACU012030, Minke Whale)

Protein Percentage 93.8%
cDNA percentage 95.16%
Ka/Ks Ratio 0.23467 (Ka = 0.0354, Ks = 0.1511)

Additional orthologs identified in other species via the OPTIC pipeline.

TRIM50 (Cow)   Trim50 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1464 bp    Location:15086..7217   Strand:-
Raw sequence 
>bmy_00359
ATGGCGTGGCAAGTGAGCGTGCCCGAGCTGGAGGACCGCCTGCAGTGCCCCATCTGTCTGGAGGTCTTCAAGGAGCCCCTGATGCTGCAGTGCGGCCACTCCTACTGCAAGGGCTGCCTGCTGTCCCTGTCCCGTCACCCGGACTCGGAGCTGCGCTGCCCCGTGTGCCGGCAGGAGGTGGACTGCAGCAGCTCCCCGCCTAACGTCTCCCTGGCGAAGGTGATCGAAGCCCTGCAGCTCCCCGGGGACCCTGAGCCCCAGGTCTGTGCGCACCACCGGAACCCTCTCAGCCTCTTCTGTGAGAAGGACCAGGAGCTCATCTGCGGCCTCTGCGGCCTGCTGGGCTCCCACCAGCACCACCGGGTCACGCCTGTCTCTACCGTCTACAGCCGCATGAAGGAGGAGCTAGCAGCCCTCATCTCTGAGCTGAAGCAGGAGCAGAGGACGGTGGAGGAGCAAATTGCCAGACTGGTGAACAACAGGACCCGGATTGTCAATGAGTCTGATGTCTTCAGCTGGGTGATCCGCAGTGAGTTCCAGGAGCTGCACCATCTGGTGGACGAGGAGAAGGCCCGCTGCCTGGAGGGGGTGGAGGGTCACACCCGTGGCCTCGTGGCCTCCCTGGACATGCAGCTGGAGCAGGCCCGGGGCGCTCGGGAGCGGCTAGTGCAGGCTGTGGGTATGTTGGAGCAGTTCGGCAACGAGAGTCACCATGAGTTCATCCGGAAGTACCATGCCATGGCCTCCAGTGCAGAGCTCCAGCAGGCCCGGCCCCTGGAAGGCGCGTTCAGCCCCATCTCCTTCAAGCCAGGCCTGCACCAGGCTGACATCAAGCTGACTGCGTGGAAAAGGCTCTTCCGAAAGGTTCTGCCAGCCCCGGAGTCCCTCAAGCTGGATCCTGCCACGGCCCACCCCCTCCTGGAGCTCTCCAAGGGCAACACGGTGGTGCAGTGCGGGCTCCTGGCCCAGCGGCGCGCCAGCCAGCCCGAGCGCTTCGACTACAGCACTTGCGTCCTGGCCAGCAGGGGCTTCTCCTGCGGCCGCCACTACTGGGAGGTGGTGGTGGGCAGCAAGAGCGACTGGCGCCTGGGGGTCATCAAGGGCACAGCCAGTCGCAAGGGCAAGCTGAGCAAGTCCCCAGGGCATGGCGTGTGGCTCATCGGCCTGAAGGAGGGCCGGGTGTACGAGGCCTTCGGCTGCCCGCGGGCGCCCCTGCCCGTGGCCGGCCACCCTCACCGCATCGGCGTCTACCTGCACTACGAGCAGGGGGAGCTCACCTTCTTCGACGCCGACCGCCCCGACGACCTGCGGCCGCTCTACACCTTCCAGGCCGACTTCCAGGGCAAGCTCTACCCCATCCTGGACACATGCTGGCACGAAAGGGGCAGCAACTCCCTGCCCCTGGTGCTGCCCCCGCCCAGCGGGCCCAGCCACCTCACCCCCCCGCAGCCCACCAAGCTGTAG

Related Sequences

bmy_00359T0 SequenceType object (3)

Length: 488 aa      
>bmy_00359T0
MAWQVSVPELEDRLQCPICLEVFKEPLMLQCGHSYCKGCLLSLSRHPDSELRCPVCRQEVDCSSSPPNVSLAKVIEALQLPGDPEPQVCAHHRNPLSLFCEKDQELICGLCGLLGSHQHHRVTPVSTVYSRMKEELAALISELKQEQRTVEEQIARLVNNRTRIVNESDVFSWVIRSEFQELHHLVDEEKARCLEGVEGHTRGLVASLDMQLEQARGARERLVQAVGMLEQFGNESHHEFIRKYHAMASSAELQQARPLEGAFSPISFKPGLHQADIKLTAWKRLFRKVLPAPESLKLDPATAHPLLELSKGNTVVQCGLLAQRRASQPERFDYSTCVLASRGFSCGRHYWEVVVGSKSDWRLGVIKGTASRKGKLSKSPGHGVWLIGLKEGRVYEAFGCPRAPLPVAGHPHRIGVYLHYEQGELTFFDADRPDDLRPLYTFQADFQGKLYPILDTCWHERGSNSLPLVLPPPSGPSHLTPPQPTKL*