Part of scaffold_5 (Scaffold)

For more information consult the page for scaffold_5 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

STX1A ENSTTRG00000008403 (Bottlenosed dolphin)

Gene Details

syntaxin 1A (brain)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007962, Bottlenosed dolphin)

Protein Percentage 94.79%
cDNA percentage 95.49%
Ka/Ks Ratio 0.20637 (Ka = 0.0315, Ks = 0.1526)

STX1A ENSBTAG00000017075 (Cow)

Gene Details

syntaxin-1A

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000003031, Cow)

Protein Percentage 87.5%
cDNA percentage 87.73%
Ka/Ks Ratio 0.12473 (Ka = 0.0802, Ks = 0.6434)

STX1A  (Minke Whale)

Gene Details

syntaxin 1A (brain)

External Links

Gene match (Identifier: BACU012020, Minke Whale)

Protein Percentage 99.64%
cDNA percentage 99.64%
Ka/Ks Ratio 0.10985 (Ka = 0.0015, Ks = 0.0135)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 897 bp    Location:294915..287117   Strand:-
>bmy_00372
GTCCAGCGGGACCCAGTGGTCCTAGCACAGGTCTGCTCATGTGTGCACACCCCTGTGCAGGCCAAGGACAGCGATGATGATGATGATGTCACTGTCACCGTGGACCGAGACCGCTTCATGGATGAGTTCTTCGAGCAGGTGGAGGAGATCCGCGGCTTCATTGACAAGATCTCAGAGAACGTGGAGGAGGTGAAGCGGAAGCACAGCGCCATCCTGGCCTCCCCCAACCCTGATGAGAAAACCAAGGAAGAGCTGGAGGAACTCATGTCTGACATAAAGAAGACAGCAAACAAAGTTCGCTCCAAATTGAAGAGCATCGAGCAGAGCATCGAGCAGGAGGAAGGCCTGAGCCGCTCATCCGCTGACCTGAGGATCCGAAAGACACAGCACTCCACACTGTCCCGGAAGTTTGTGGAGGTGATGTCCGAGTACAACGCCACGCAGACTGACTACCGCGAGCGCTGCAAGGGCCGCATCCAGAGGCAGCTGGAGATCACCGGCCGGACCACGACCAGCGAGGAGCTGGAGGACATGCTGGAGAGTGGGAACCCCGCCATCTTTGCCTCCGGGATCATCATGGACTCCAGCATCTCAAAGCAGGCCCTGAGCGAGATTGAGACGCGCCACAGTGAGATCATCAAGCTGGAGAACAGCATCCGGGAGCTGCACGACATGTTCATGGACATGGCCATGCTTGTGGAGAGCCAGGGAGAGATGATTGACAGGATTGAGTACAACGTGGAACATTCAGTGGACTACGTGGAGAGGGCTGTGTCTGACACCAAGAAGGCCGTCAAGTACCAGAGCAAGGCTCGCCGGAAGAAGATCATGATCATCATCTGCTGTGTGGTCCTGGGCATCGTCATTGCCTCCACCTTCGGAGGCATCTTCGGGTAG

Related Sequences

bmy_00372T0 Protein

Length: 299 aa      View alignments
>bmy_00372T0
VQRDPVVLAQVCSCVHTPVQAKDSDDDDDVTVTVDRDRFMDEFFEQVEEIRGFIDKISENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLSRSSADLRIRKTQHSTLSRKFVEVMSEYNATQTDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDSSISKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHSVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVVLGIVIASTFGGIFG*