Part of scaffold_5 (Scaffold)

For more information consult the page for scaffold_5 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CLDN3 ENSTTRG00000008392 (Bottlenosed dolphin)

Gene Details

claudin 3

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007950, Bottlenosed dolphin)

Protein Percentage 95.45%
cDNA percentage 96.82%
Ka/Ks Ratio 0.11567 (Ka = 0.0177, Ks = 0.1534)

CLDN3 ENSBTAG00000040432 (Cow)

Gene Details

Claudin-3

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000001810, Cow)

Protein Percentage 93.61%
cDNA percentage 94.52%
Ka/Ks Ratio 0.0738 (Ka = 0.0267, Ks = 0.3617)

CLDN3  (Minke Whale)

Gene Details

claudin 3

External Links

Gene match (Identifier: BACU012017, Minke Whale)

Protein Percentage 98.18%
cDNA percentage 99.09%
Ka/Ks Ratio 0.23656 (Ka = 0.0069, Ks = 0.0292)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 669 bp    Location:335585..334917   Strand:-
>bmy_00375
ATGTCCATGGGCCTGGAGATCGCGGGCACCTCGCTGGCCGTGCTGGGCTGGCTGGGCACCATCGTGTGCTGCGCGCTGCCCATGTGGCGCGTGACGGCCTTCATCGGCAGCAGCATCATCACGGCGCAGATCACCTGGGAGGGCCTGTGGATGAACTGCGTGGTGCAGAGCACGGGCCAGATGCAGTGCAAGGTGTACGACTCGCTGCTGGCGCTGCCGCAGGACCTGCAGGCGGCCCGCGCCCTCATCGTCATCGCCATCCTGCTGGCCGCCTTCGGGCTCCTTGTGGCGCTCGTGGGTGCCCAGTGCACCAACTGTGTGCAGGACGACACGGCCAAGGCCAAGATCACCATCGTGGCGGGCGTGCTCTTCCTGCTGGCCGCCTTGCTCACCCTGGTGCCGGTGTCCTGGTCGGCCAACACCATCATCCGGGACTTCTACAACCCCTTGGTGCCAGATGCACAGAAGCGCGAGATGGGCTCCGCCCTGTACGCGGGCTGGGCGGCCGCGGCGCTGCAGCTGCTGGGGGGCGCGCTGCTCTGCTGCTCGTGCCCGCCGCGCGAGAAGAAATACACGTCTGCCAAGATCTTCTACTCGGCGCCGCGCTCCACCGGCCCGGGCACCGGCACCGGCACCGGCACAGCCTACGACCGCAAGGACTACGTCTGA

Related Sequences

bmy_00375T0 Protein

Length: 223 aa      View alignments
>bmy_00375T0
MSMGLEIAGTSLAVLGWLGTIVCCALPMWRVTAFIGSSIITAQITWEGLWMNCVVQSTGQMQCKVYDSLLALPQDLQAARALIVIAILLAAFGLLVALVGAQCTNCVQDDTAKAKITIVAGVLFLLAALLTLVPVSWSANTIIRDFYNPLVPDAQKREMGSALYAGWAAAALQLLGGALLCCSCPPREKKYTSAKIFYSAPRSTGPGTGTGTGTAYDRKDYV*