Part of scaffold_5 (Scaffold)

For more information consult the page for scaffold_5 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RFC2 ENSTTRG00000008760 (Bottlenosed dolphin)

Gene Details

replication factor C (activator 1) 2, 40kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008303, Bottlenosed dolphin)

Protein Percentage 78.48%
cDNA percentage 79.54%
Ka/Ks Ratio 0.38617 (Ka = 0.0918, Ks = 0.2378)

RFC2 ENSBTAG00000018589 (Cow)

Gene Details

Replication factor C subunit 2

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000024740, Cow)

Protein Percentage 88.0%
cDNA percentage 87.33%
Ka/Ks Ratio 0.23321 (Ka = 0.0875, Ks = 0.3753)

RFC2  (Minke Whale)

Gene Details

replication factor C (activator 1) 2, 40kDa

External Links

Gene match (Identifier: BACU012011, Minke Whale)

Protein Percentage 91.14%
cDNA percentage 92.1%
Ka/Ks Ratio 0.4576 (Ka = 0.0681, Ks = 0.1489)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1131 bp    Location:692390..670333   Strand:-
>bmy_00383
ATGGAGGCGCAGGAGAGCGGCGGTGGCAGTGGCGAGTGCGGGGCCCAGGACCTTGACCCGGCCCCCAGCAAGGCCCCCGGCAGCGCCGGCCAGTACGAGCTGCCGTGGTCTTTGCAAGAGAAGGGAATGTGCCCAATATCATCATTGCTAGCTTCCTCCTCAAGGAAGCCCATGATCACCAGAGCCCATACCATTCCCACCTCCCACTGGTCAGGCCTGCGGGTTGGTTGCTGTATTGATCTGGGCCCYCCAGGAACCGGCAAAACTACCAGCATCCTGTGTTTGGCACGAGCCCTGCTGGGTCCGGCCTTCAAGGATGCCGTTTTGGAGCTCAATGCCTCAAATGACAGGTAYACCTGGGAGGGCATTGACGTTGTGAGGAACAAAATCAAAATGTTTGCCCAACAGAAAGTCACCCTTCCCAAAGGGCGACACAAGATCATCATCCTGGATGAAGCAGACAGCATGACTGATGGAGCCCAGCAAGCCTTGAGGAGAACCATGGAAATCTACTCCAAAACGACCCGCTTCGCTCTTGCTTGTAATGCTTCGGATAAAATCATAGAGCCCATTCAGTCCCGGTGCGCAGTCCTCCGCTACACCAAGCTGACCGACGCTCAGATTCTTGCCAGGCTGCTGAACGTCATCGAGAAGGAGAAGGTGCAGTCCACGGACGATGGCCTGGAAGCCATCCTCTTCACCGCCCAGGGTGACATGAGGCAGGCATTGAACAACTTGCAGTCTACTTTCTCGGGATTCGGCTTCATCAACAGTGAGAATGTGTTCAAGGTCGACACCGAAGTCTATTTGGTGACGACTCTGGTGGTCTGTGACGAGCCCCACCCCTTGCTGGTGAAGGAGATGATCCAGCACTGTGTGAGCGCCAGTATCGATGAGGCCTACAAGATCCTCGCTCACCTGTGGCATCTTGGCTATTCCCCAGAAGACATCATTGGCAACATTTTTCGAGTGTGCAAAACCTTCCAAATGGCAGAATACTTGAAACTGGAGTTTATTAAGGAAATTGGATACACTCATATGAAAATAGCGGAAGGTGTGAACTCCCTTCTGCAGATGGCAGGGCTCCTGGCCAGGCTGTGTCAGAAGACAATGGCCCCGGTGGCCAGTTAG

Related Sequences

bmy_00383T0 Protein

Length: 377 aa      View alignments
>bmy_00383T0
MEAQESGGGSGECGAQDLDPAPSKAPGSAGQYELPWSLQEKGMCPISSLLASSSRKPMITRAHTIPTSHWSGLRVGCCIDLGPPGTGKTTSILCLARALLGPAFKDAVLELNASNDRYTWEGIDVVRNKIKMFAQQKVTLPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLNVIEKEKVQSTDDGLEAILFTAQGDMRQALNNLQSTFSGFGFINSENVFKVDTEVYLVTTLVVCDEPHPLLVKEMIQHCVSASIDEAYKILAHLWHLGYSPEDIIGNIFRVCKTFQMAEYLKLEFIKEIGYTHMKIAEGVNSLLQMAGLLARLCQKTMAPVAS*