Part of scaffold_6 (Scaffold)

For more information consult the page for scaffold_6 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SLC6A1 ENSTTRG00000000738 (Bottlenosed dolphin)

Gene Details

solute carrier family 6 (neurotransmitter transporter, GABA), member 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000694, Bottlenosed dolphin)

Protein Percentage 91.78%
cDNA percentage 92.09%
Ka/Ks Ratio 0.17837 (Ka = 0.0316, Ks = 0.1773)

SLC6A1 ENSBTAG00000005857 (Cow)

Gene Details

sodium- and chloride-dependent GABA transporter 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000007699, Cow)

Protein Percentage 95.06%
cDNA percentage 92.08%
Ka/Ks Ratio 0.06326 (Ka = 0.0289, Ks = 0.4565)

SLC6A1  (Minke Whale)

Gene Details

solute carrier family 6 (neurotransmitter transporter), member 1

External Links

Gene match (Identifier: BACU015177, Minke Whale)

Protein Percentage 94.19%
cDNA percentage 95.12%
Ka/Ks Ratio 0.32648 (Ka = 0.0389, Ks = 0.1193)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1581 bp    Location:1969894..1953450   Strand:-
>bmy_00426
ATGGCGACCAATGGCAGCAAGGTGGCCGATGGGCAGATCTCCACGGAGGTCAGCGAGGTCCCCGTGGCCAATGACAAGCCCAAAACCCTGGTGGTCAAGGTGCAGAAAAAGACGGCGGACCTTCCAGACCGGGACACATGGAAGGGCCGCTTCGACTTCCTCATGTCCTGCGTGGGCTATGCCATCGGGCTGGGCAACGTCTGGAGGTTCCCATATCTCTGCGGGAAGAACGGTGGCGGGGCCTTCCTGATCCCCTACTTCCTGACGCTCATCTTTGCGGGGGTCCCGCTCTTCCTGCTGGAGTGCTCCCTGGGCCAGTACACGTCCATCGGGGGCCTGGGGGTGTGGAAGCTGGCCCCCATGTTCAAGGAGGAGGACCCAGTCCAGAGGCCCCGCACGCACGTCAGCCTGCCCTGTCCTACGCTGCCGTGGAAACAGTGTGACAACCCCTGGAACACAGACCGCTGCTTCTCCAACTACAGCATTGTCAACACCACCTCCATGACCAGCGCCGTGGTGGAGTTCTGGGAGCGCAACATGCATCAGATGACAGACGGGCTGGATAAGCCAGGTCAGATCCGCTGGCCTCTGGCCATCACCCTGGCCATCGCGTGGATCCTTGTGTATTTCTGTATCTGGAAGGGTGTTGGCTGGACTGGAAAGGTGGTCTACTTCTCTGCCACGTATCCCTACATCATGCTGATCATCCTGTTCTTCCGCGGAGTGACGCTCCCCGGGGCCAAGGAGGGCATCCTCTTCTACATCACACCCAACTTCCGCAAGCTGTCGGACTCTGAGGTGTGGCTGGATGCGGCTACCCAGATCTTTTTCTCCTATGGGCTGGGCCTGGGATCCCTGATCGCTCTCGGCAGCTACAACTCTTTCCACAACAACGTCTACAGGGACTCCATCATCGTCTGCTGCATCAATTCCTGCACCAGCATGTTTGCAGGATTTGTTATCTTCTCCATCGTGGGCTTCATGGCCCATGTCACCAAGAGGTCCATTGCTGATGTGGCGGCCTCAGGCCCTGGGCTGGCGTTCCTGGCATATCCGGAGGCGGTGACACAGCTGCCCATCTCTCCCCTCTGGGCCATCCTCTTCTTCTCCATGCTGCTCATGCTGGGCATTGACAGCCAGTTCTGCACAGTGGAAGGCTTCATCACTGCCCTGGTGGACGAGTACCCCAGGCTGCTCCGCAACCGCAGGGAGCTATTCATCGCCGCCGTCTGCATTGTCTCCTACCTGATCGGCCTGTCTAACATCACCCAGGGGGGCATTTATGTCTTCAAACTCTTTGATTACTACTCCGCCAGCGGCATGAGCCTGCTGTTCCTCGTGTTCTTTGAATGTGTCTCCATTTCCTGGTTTTATGGTGTCAACCGATTCTATGACAACATCCAAGAGATGGTTGGCTCCAGGCCCTGTATCTGGTGGAAGCTCTGCTGGTCCTTCTTCACCCCCATCATTGTGGCGCGCATCCAGGTCATGATCCAGCCCAGCGAAGACATCGTCCGCCCCGAGAATGGTCCAGAGCAGCCCCAGGCCAGCGGCTCAGCCAGCAAAGAGGCCTACATCTAG

Related Sequences

bmy_00426T0 Protein

Length: 527 aa      View alignments
>bmy_00426T0
MATNGSKVADGQISTEVSEVPVANDKPKTLVVKVQKKTADLPDRDTWKGRFDFLMSCVGYAIGLGNVWRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKLAPMFKEEDPVQRPRTHVSLPCPTLPWKQCDNPWNTDRCFSNYSIVNTTSMTSAVVEFWERNMHQMTDGLDKPGQIRWPLAITLAIAWILVYFCIWKGVGWTGKVVYFSATYPYIMLIILFFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRSIADVAASGPGLAFLAYPEAVTQLPISPLWAILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIVSYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVARIQVMIQPSEDIVRPENGPEQPQASGSASKEAYI*