Sequence detailsbmy_00444 (Coding sequence)

Part of scaffold_6 (SequenceType object (1))

For more information consult the page for scaffold_6 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RPUSD3ENSTTRG00000007544 (Bottlenosed dolphin)

Gene Details

RNA pseudouridylate synthase domain containing 3

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000007137, Bottlenosed dolphin)

Protein Percentage 94.17%
cDNA percentage 96.66%
Ka/Ks Ratio 0.55709 (Ka = 0.0283, Ks = 0.0509)

RPUSD3ENSBTAG00000007968 (Cow)

Gene Details

RNA pseudouridylate synthase domain-containing protein 3

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000010478, Cow)

Protein Percentage 84.72%
cDNA percentage 88.93%
Ka/Ks Ratio 0.38357 (Ka = 0.0855, Ks = 0.2229)

RPUSD3 (Minke Whale)

Gene Details

RNA pseudouridylate synthase domain containing 3

External Links

Gene match (Identifier: BACU019325, Minke Whale)

Protein Percentage 98.71%
cDNA percentage 98.81%
Ka/Ks Ratio 0.251 (Ka = 0.0064, Ks = 0.0254)

Additional orthologs identified in other species via the OPTIC pipeline.

RPUSD3 (Human)   Rpusd3 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1071 bp    Location:2968633..2975406   Strand:+
Raw sequence 
>bmy_00444
CAGACGAGAATTTCTTCATCTCGTTCCCTGGCAAAGGCAAAGCTCCGCCTTCTCACAGCTCTGAGCCTCGCTATTCCGATTGACAGTCAATCTGACCAATCAGCGCGCTGTGGGGCATCCCTGGGCAGCCCTTCCGGACACATGCTCACTGTCCTCGCTCCGGAGATGGGCGGCTGTCGCGTTTTGGGCCAGGTCTGGGGTGGCTGGCGGCGGGGTCCGGGGGTCCGCGCAGCGCCCACAGCCTCAAGCTTTGGCACCGAGGCCCGGCATCAGCAGCAACATCGAGGCTCCAGCAAACGGTCGGGGCCCCTGGATGACCAGCCTTTCTCGGGGCTGCTGCGGCCAGAGAACCTCAGTAGGGAGGAGCTGGTAGATGTGCTGAGGGCAGCTGTAGTGGATCAGAAAGGAAAACCAGGAGAGCTGACGTTGCTCTCAGTGCTCCCGGAGCTGAGCCAGTCCCTGGGGCTCGGGGAGCGGGAGCTCCAGGTTGTCCGAGCATCTGGGAATTGTCCCCAGACAGCAAGCCGCCTCCAGAAGTTCTTCACTCACTCACAGAGAGCCAGGAGACCCACAGTCACCTACTGTGCTGTCACTGATGGGATCCCAGCTACTTCTGAGGGGACGATCCAAGCAGCTCTGAAACTGGAACACATTGATGGGGTTAATCTTGTAGTTCCAGTGAAGTCCCCATCCCGAAAGGACATCTTGGAAGGTGTCAAGAGGACCCTCAGCTACTTCCGTGTGGTGGCCACGGGCTCTGGCTGTGCCCTGGTCCAGCTGCAGCCACTGACAGCGTTTCCCAGCCAGCTACAGGCGCACATGGCACTACAGCTCTGCCCTCTGCTCGGGGACCACACGCACTCTGCCCGTGTGGCCACTGTCCTGGATGAAGCCCTCCTCAGCCGCCTCCACCTGACCCCCTCCCAGGCTGCCCAGCTGCCCCTGCACCTCCACCTGCATTGTCTCTACCTCCCAGGTGCCAGGCCCAGGGACCCACCCATCAAGCTTCTGGCACCTTTGCCCTCTTATTTCTCCAGGACCCTGCATTGCCTGGGGCTCCACTACCAATAG

Related Sequences

bmy_00444T0 SequenceType object (3)

Length: 357 aa      View alignments
>bmy_00444T0
QTRISSSRSLAKAKLRLLTALSLAIPIDSQSDQSARCGASLGSPSGHMLTVLAPEMGGCRVLGQVWGGWRRGPGVRAAPTASSFGTEARHQQQHRGSSKRSGPLDDQPFSGLLRPENLSREELVDVLRAAVVDQKGKPGELTLLSVLPELSQSLGLGERELQVVRASGNCPQTASRLQKFFTHSQRARRPTVTYCAVTDGIPATSEGTIQAALKLEHIDGVNLVVPVKSPSRKDILEGVKRTLSYFRVVATGSGCALVQLQPLTAFPSQLQAHMALQLCPLLGDHTHSARVATVLDEALLSRLHLTPSQAAQLPLHLHLHCLYLPGARPRDPPIKLLAPLPSYFSRTLHCLGLHYQ*