Part of scaffold_6 (Scaffold)

For more information consult the page for scaffold_6 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LMCD1 ENSTTRG00000006023 (Bottlenosed dolphin)

Gene Details

LIM and cysteine-rich domains 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000005684, Bottlenosed dolphin)

Protein Percentage 69.86%
cDNA percentage 72.83%
Ka/Ks Ratio 0.28507 (Ka = 0.1652, Ks = 0.5796)

LMCD1 ENSBTAG00000005431 (Cow)

Gene Details

LIM and cysteine-rich domains protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000007149, Cow)

Protein Percentage 79.77%
cDNA percentage 80.15%
Ka/Ks Ratio 0.18058 (Ka = 0.1507, Ks = 0.8348)

LMCD1  (Minke Whale)

Gene Details

LIM and cysteine-rich domains 1

External Links

Gene match (Identifier: BACU015148, Minke Whale)

Protein Percentage 80.53%
cDNA percentage 83.72%
Ka/Ks Ratio 0.31456 (Ka = 0.1444, Ks = 0.459)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 885 bp    Location:4063820..4032951   Strand:-
>bmy_00468
ATGAGCAGGGATTCCATAAACGTGGGAGAACCAGTGGGTCTGGGTGGCAAAGGAGAGGTCAAGCATCCCCGGTCCAAGACGTTTGGAAGGAAAACACCCTCTTTTCTGTCTCCTTTTCCAGATGTCCCTGGGCCAGCAGCAGTCAGCAAGAGGTGTGCCTTGTCTGAGATGCAAGGGGACGTGTTCGGGCTTCGAGCCACATTCATGGAGGCCTGCCCCATCCCACGGAAAATGTGCAAGTCATGCAAATGCAGTCAAGAGGACCACTGCCTGAGCTCGGACCTGGAAGACGATCGGAAAATTGGCCGCTTGCTGATGGACTCCAAGTATTCCACCCTCACGGCCCGAGTGAAAGGCGGGGACGGCATCCGGATTTACAAGAGGAACCGAATGATCATGACCAACCCCATTGCCACCGGGAAAGATCCCACCTTTGACACCATCACCTATGAGTGGGCTCCCCCTGGAGTCACCCAGAAACTGGGCCTGCAGTACATGGAGCTCATCCCCAAGGAGAAGCAGCCAGTGACGGGCACCGAGGGTGCCTACTACCGCCGGCGCCAGCTCTCGCGCCAGCTGCCCATCTACGACCAGGACCCCTCTCGCTGCCGCGGACTTTTGGAGAACGAGCTGAAAGTGATGGAAGAGTTTGTGAAGCAGTACAAGAGCGAGGCCCTGGGTGTGGGCGAAGTGGCCCTCCCCGGGCAGGGCGGCTTGCCCAAGGAGGAGGGGAAGCAGCAGGAGAAGCCCGAGGGCGCAGAGACGGCCGCCCCGACTACCAACGGCAGCCTCAGCGACCCATCCAAGGAATACTTTTCATCCCTGCCGGGAGACCCCAGCTCCTGCCTCATGGGCCAAGCCGTGGCCCCAGAGAAAAGTGATTAA

Related Sequences

bmy_00468T0 Protein

Length: 295 aa      View alignments
>bmy_00468T0
MSRDSINVGEPVGLGGKGEVKHPRSKTFGRKTPSFLSPFPDVPGPAAVSKRCALSEMQGDVFGLRATFMEACPIPRKMCKSCKCSQEDHCLSSDLEDDRKIGRLLMDSKYSTLTARVKGGDGIRIYKRNRMIMTNPIATGKDPTFDTITYEWAPPGVTQKLGLQYMELIPKEKQPVTGTEGAYYRRRQLSRQLPIYDQDPSRCRGLLENELKVMEEFVKQYKSEALGVGEVALPGQGGLPKEEGKQQEKPEGAETAAPTTNGSLSDPSKEYFSSLPGDPSSCLMGQAVAPEKSD*