Part of scaffold_13 (Scaffold)

For more information consult the page for scaffold_13 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

APOBR ENSBTAG00000018011 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000037175, Cow)

Protein Percentage 71.75%
cDNA percentage 82.54%
Ka/Ks Ratio 0.73805 (Ka = 0.2009, Ks = 0.2722)

APOBR  (Minke Whale)

Gene Details

apolipoprotein B receptor

External Links

Gene match (Identifier: BACU011903, Minke Whale)

Protein Percentage 91.5%
cDNA percentage 93.78%
Ka/Ks Ratio 0.56592 (Ka = 0.0539, Ks = 0.0952)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 3057 bp    Location:2084661..2080133   Strand:-
>bmy_00791
GGGCTCGGGGTGGGGRTGCGTCAGGGAGAGACAGGGGAAGAGGAAGTGTCTTGGGTCCTGGGGAAGACTGGCTTGGTGGGTGGGGACAATCATTGTCAGCTTTCTGGACACACAGAGACAGACGGGATGGATTTCCTCCGGCTACATCTCCCTGGGCTGCATCAGGCCTTGAGGGGGGCACTGGAGTCTTTCAGCACCTTTGTCTCCTACCTTATGGGAGATGATGTCCCCACTGCAGAGAAGAGGGAGGCGTGTGCAGCTGAGGAACTTGGGGAGGTGGCTGCAAGAAGGCTTGGGGGGAAGGTAGAGGAGGAAGCCCAGGAGGCCGTGGAGGGCCTTGGAGGCAGCCAAAGCAAGGGGGATGAAGGGCTGAGAGGGCCTGGAGAGGCTGGAAGATGCCAGGAGGAAAGCTCAGCTACAGAACAGACCTGGGGTGGGGGAGAAGGCAGCTCCCATGGGTCTCAAGCAGATAGGCAGGACACTGGGGCCTGGGAGGCAGCCACAGCCATTAGATGCCAGCATTCAAGTATCCCCCTGGAGCCCAGAAAGAAGTCTGAGGCAGGGTCTGAGGCTGGTCGAGACAGGAGTAGCCAAGCCCAGGAGAGTCAGCAGCCCGATGAGCAGGAAGTGAAGAGAGAGGAGACACTGAGAACCTGGGAACGGGAGGAGGAGGAGGAAGAGGTCAGGGCAACAGAGCCAGGGGTGGCTGGAGGGGCGGAGTCAGAGGGGACCTGGCACAAGGAGCTTGAGCGGAAGGTGAGTGTTGATGGGCAAAAGGTGGCAGAGGACAGAAAGGAGTCAGAGCAGGGGGTTGATGAGACAGCTGCAGAGGAGATCCAGGGGCCTGGGGCCAAAGGGGCTGGGAGGGAAGAAGAGGTGGTAGTGGTAAGGGGTGGCCAAAGCACAAGGGCACAGGGGACACAGGAGCCAGGGGCAGAATCTGAGGACAGGGAAACCTCAGGCAGGGAGGAGGCTGACCTCCCAGGGGTTGGGGAGACTGAACACGGGGCAGTCCCAAGAGAAAGGATTCCAGAGGGTACTGGGAGAGTCTGGGCCCTAGAGGAGACCTCCAAGCGAGACCAGGAGGAGGAGGAGGTGGACGAGAATAGAGAGGCTGAAGTGAGCCTGTTCCCCAAACAGACCCAGGCCCTGGGAACTGAGAGAGTGGAAGAAGCGGCCAAGGACCAGGCAGCAGGGAGGGAAGCTGAGGAAGGTCAGGAGTCAGAGGCGGAGGGAAGGGAGGGCTTTGAGGGCCAGGCAGATCAGGCTGAGGAAGAGGCTGTGGAGAGGCAAGACTCAGAGATCAGGGCTGCTCAGACCAGTCTCAAGGAGGTGGTGCAGGCAGAGGAGGCCGAGGAGCAGCAGAAGAGTTGCTGGGCTGCAGAGGCTGAGCTGCTCCAGGACAAAGTAGCAAATGAGGCTGAAGGTGATGTTGACTTGGAGGCAACCCCAGAGGCCAGGCCCAAGAAGGAGTTCAGCAGGGAGAGGGGTGAGGAAGAGGCTCAGACCAGGGGAGAAGCACTGGAGGTGGGGTGGGGTGGCCTTGAGCACAGGGTCACTGAAGGCCAAGAACCTGAGCTGGTGGGAGGCCCCCAGACCCCCACAGAGCAACCTGAGGAAGGGCAGGTATGTAAGGAAGAGCTCTGGAGCATTCCAGCCCTGAGCAGAGAGGAGACAGACAGGAGCCTGGAGGAATATCCCGGGAACGTGGGGTATGTAGAACCTAACAGCTCTGTGGCTGAAGCCTGGGAAGACAGAAGAAGGGATGTGGAGACAGGGAACACCCAGGAGGAAAAAGCAGATGCTGAAGAGGGGAAGGAGGAGGCTACAGGAGGCCAGGCACCGGTGGCTGAGGCTGAAGGAGGCCGAGAGTCTGCACGACCAGAGGTCCCAGAGGCAGGCGGGGAGTGGATGAAAGTAAAGGAAGCCTGGCATGAAGCAGAGGAGGGGGAGGCCCCTGGAGCAGAGAACCAGGAGCTGGGTGGAAGGCAGGGAGCAGAAGCAGGGACCGTCCAGTCATTGGGAGAGTCAGAGGCCACAGAAACCAAGGAGGAGGAGGTGGAGGCCGCCGTGCCCTGGGGGGMAGACAGAACATCCAGGAGAGGCTGGAGGCTGGAGGCGGAGGCTCCGAGTCTCCAGGACAGCGACGACATGGAGACAAATTCTTTGGCTACTGAGATCGTGGAGGATAAGGCAGCTCTGGATGGAAGGGCTCCTGGGACTGGGGACAGGCCCGGCAGAGAGGCTGAGGAAGCATTCGGGAGAGACTGGGATTCAGAAGGGAGAGAGGAAGCCGGCGGAGGTGAGGACCTGGTAGAGGCTGCAGAGGGGGAGAAAACAGGTGGGCAGGAGTTTGGCCTGGAGGGCTCAGCAGAGGAGGAGGTGCCTGGCAGAGGTGGCCAAGCAGAGGCTTCTGAGGCCACTCGGGAGGGTGAGCCCCGGGGAGAGCAGGCTGAGGTGGAGGAATCCGCAGTAGCAGAAGGAAGCTGGGGGATGGATGGCGTTACCTCGGGCTCCCAGGTGGTGAGGGTAGAGGGCCTCCCAGGAGGGCACACACTGGGGGAAGAAGAGGCTGGAGGATGGCAAGCGAGGGAGCAGGGGCAAAGCAGTGAGGGGCAGCATGGGGACAAGCACCCCGAGGGAGAGGCACAAAGGCCCCTTGAGGTGGAGGATATCGAGGTGACTGGAGACCAAAAGGCAGAGGCCAAGGAGATGGATCCAGAAGGCCTGGAGGACGTCCAGGGCCAAGAGGACCAGTCAACCAACCAGGACCCTGCAGAGGCTGAGCCTAGCCCATGCGGGGAGGCCACCGGGAGCGCCAGAGGGGATGCTCACAGCAGCTGGAGTGAGGTGAGGGCTCCAGGTATGGTCCCGGGCTGGACAGAGCAGAGTCTCGAAGCTGAAGCCGGCCCCGTGGTACCCCGTGCCCTCTTCCCCGTAGGCCCTGCTGCCTGGGTCTTGCCTGGATGTCTCTGTCCCGAGGAGCCGAGTACTCCTTTCCCGCAGCTCCTCGCAGCGCCGCTCCCGGCCCTCCTTCCGACGGACCCCCGTCCCTGA

Related Sequences

bmy_00791T0 Protein

Length: 1019 aa     
>bmy_00791T0
GLGVGXRQGETGEEEVSWVLGKTGLVGGDNHCQLSGHTETDGMDFLRLHLPGLHQALRGALESFSTFVSYLMGDDVPTAEKREACAAEELGEVAARRLGGKVEEEAQEAVEGLGGSQSKGDEGLRGPGEAGRCQEESSATEQTWGGGEGSSHGSQADRQDTGAWEAATAIRCQHSSIPLEPRKKSEAGSEAGRDRSSQAQESQQPDEQEVKREETLRTWEREEEEEEVRATEPGVAGGAESEGTWHKELERKVSVDGQKVAEDRKESEQGVDETAAEEIQGPGAKGAGREEEVVVVRGGQSTRAQGTQEPGAESEDRETSGREEADLPGVGETEHGAVPRERIPEGTGRVWALEETSKRDQEEEEVDENREAEVSLFPKQTQALGTERVEEAAKDQAAGREAEEGQESEAEGREGFEGQADQAEEEAVERQDSEIRAAQTSLKEVVQAEEAEEQQKSCWAAEAELLQDKVANEAEGDVDLEATPEARPKKEFSRERGEEEAQTRGEALEVGWGGLEHRVTEGQEPELVGGPQTPTEQPEEGQVCKEELWSIPALSREETDRSLEEYPGNVGYVEPNSSVAEAWEDRRRDVETGNTQEEKADAEEGKEEATGGQAPVAEAEGGRESARPEVPEAGGEWMKVKEAWHEAEEGEAPGAENQELGGRQGAEAGTVQSLGESEATETKEEEVEAAVPWGXDRTSRRGWRLEAEAPSLQDSDDMETNSLATEIVEDKAALDGRAPGTGDRPGREAEEAFGRDWDSEGREEAGGGEDLVEAAEGEKTGGQEFGLEGSAEEEVPGRGGQAEASEATREGEPRGEQAEVEESAVAEGSWGMDGVTSGSQVVRVEGLPGGHTLGEEEAGGWQAREQGQSSEGQHGDKHPEGEAQRPLEVEDIEVTGDQKAEAKEMDPEGLEDVQGQEDQSTNQDPAEAEPSPCGEATGSARGDAHSSWSEVRAPGMVPGWTEQSLEAEAGPVVPRALFPVGPAAWVLPGCLCPEEPSTPFPQLLAAPLPALLPTDPRP*