Sequence details bmy_00792 (Coding sequence)

Part of scaffold_13 (Scaffold)

For more information consult the page for scaffold_13 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CLN3 ENSBTAG00000018000 (Cow)

Gene Details

battenin

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000023952, Cow)

Protein Percentage 93.24%
cDNA percentage 93.0%
Ka/Ks Ratio 0.16387 (Ka = 0.0342, Ks = 0.2089)

CLN3  (Minke Whale)

Gene Details

ceroid-lipofuscinosis, neuronal 3

External Links

Gene match (Identifier: BACU011902, Minke Whale)

Protein Percentage 92.03%
cDNA percentage 92.83%
Ka/Ks Ratio 0.45599 (Ka = 0.0604, Ks = 0.1324)

Additional orthologs identified in other species via the OPTIC pipeline.

CLN3 (Human)   Cln3 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 1245 bp    Location:2085954..2097490   Strand:+
Raw sequence 
>bmy_00792
ATGGGAGGCTGTGCGGGCTCTCGGCGGCGCCTTTCGGATTCGGAGGGAGAGGAGGCCGATCCGGCACCTAGGCCCCCGCCGCAGGACCGTCAGGGCGCCCATTGGAAGAACGCGGTGGGCTTCTGGCTCCTGGGCCTCTGCAACAACTTCTCTTACGTGGTGATGCTCAGCGCTGCCCACGACATCCTCAGTCACCAGAGAGCACCTGGGAACCAGAGCCATGCGGTGCTCCTGGCAGACATCCTTCCCACCCTCGTCATCAAATTGCTGGCTCCTCTTGGCCTTCATCTGCTGCCCTACAGCCCCCGGGTGCTCACCAGTGGGATTTGTGCTGCTGGAAGCTTCATCCTGGTTGCCTTTTCTCATTCGGTGGGAATCAGCCTGTGTGGTGTGGTCTTGGCTAGCATCTCTTCAGGTCTGGGGGAGGTCACCTTCCTTGCACTCACCGCCTTCTACCCCAGGGCTGTGATCTCCTGGTGGTCCTCAGGTACTGGGGGAGCAGGGCTGCTGGGGGCACTGTCCTACCTGGGCCTCACCCAGGCTGGCCTCTCTCCCCAGCACACCCTGCTGTCCATGCTGGGTATACCCGCACTGCTGCTGGCCAGCTATTTCTTGTTGCTCACGTCTCCTGGGCCCCAGGACCCTGGAGGGGAAGGGGAGGCAGACACGGCAGCCCGGCAGCCCCTGATAAACAGCGAGGCCCCAGAGTCGAAGCCAGGCTCCAGCTCACACCTGTCCCTTCAGGAAAGGTGGACCGTGTTTAAGGGCCTGCTGCGCTACATCGTCCCCTTGGTGCTGGTTTACTTTGCTGAGTATTTCATCAACCAGGGACTCTTTGAACTCCTCTTCTTCCGGAACACGTTCCTGAGTCACGCTCAGCAATACCGCTGGTACCAGATGCTGTACCAGGCCGGCGTCTTTGCCTCCCGCTCCTCTCTCCGCTGCTGTCGCATCCGCCACACATGGGCCCTGGCCTTGCTACAGTGCCTCAACCTGGCCTTCCTGCTGGCGGACGTGTGGCTGAGCTTCCTGCCGAGCATCTACCTTGTCTTCCTGATCATTCTGTATGAGGGACTCCTGGGGGGCGCGGCCTACGTGAACACCTTTCACAACATTGCCCTGGAGACCAGCAGTGAGCACCGGGAGTTTGCCATGGCAACCGCCTGTATCTCCGACACCTTGGGGATCTCGCTGTCAGGGCTCCTGGCCCTGCCTCTGCACGACTTCCTCTGCCAGTTCTCCTGA

Related Sequences

bmy_00792T0 Protein

Length: 415 aa      
>bmy_00792T0
MGGCAGSRRRLSDSEGEEADPAPRPPPQDRQGAHWKNAVGFWLLGLCNNFSYVVMLSAAHDILSHQRAPGNQSHAVLLADILPTLVIKLLAPLGLHLLPYSPRVLTSGICAAGSFILVAFSHSVGISLCGVVLASISSGLGEVTFLALTAFYPRAVISWWSSGTGGAGLLGALSYLGLTQAGLSPQHTLLSMLGIPALLLASYFLLLTSPGPQDPGGEGEADTAARQPLINSEAPESKPGSSSHLSLQERWTVFKGLLRYIVPLVLVYFAEYFINQGLFELLFFRNTFLSHAQQYRWYQMLYQAGVFASRSSLRCCRIRHTWALALLQCLNLAFLLADVWLSFLPSIYLVFLIILYEGLLGGAAYVNTFHNIALETSSEHREFAMATACISDTLGISLSGLLALPLHDFLCQFS*