Part of scaffold_14 (Scaffold)

For more information consult the page for scaffold_14 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SNRNP48 ENSTTRG00000016715 (Bottlenosed dolphin)

Gene Details

small nuclear ribonucleoprotein 48kDa (U11/U12)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015848, Bottlenosed dolphin)

Protein Percentage 95.47%
cDNA percentage 97.12%
Ka/Ks Ratio 0.42291 (Ka = 0.0236, Ks = 0.0558)

SNRNP48 ENSBTAG00000001123 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000001494, Cow)

Protein Percentage 92.59%
cDNA percentage 93.28%
Ka/Ks Ratio 0.24447 (Ka = 0.0405, Ks = 0.1658)

SNRNP48  (Minke Whale)

Gene Details

small nuclear ribonucleoprotein 48kDa (U11/U12)

External Links

Gene match (Identifier: BACU005132, Minke Whale)

Protein Percentage 98.35%
cDNA percentage 98.49%
Ka/Ks Ratio 0.30945 (Ka = 0.011, Ks = 0.0355)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 732 bp    Location:2736177..2724080   Strand:-
>bmy_00858
ATGGAGGGCGAACCTCCCCCGGTGGAGGAGCGGCGGCGGCTGCGGGAGGAGCTGAGCGAGTTCGTGGAGAGCTGCTGCCGGACGCTGGAGGAGGTGACGGCGTCGCTGGGCTGGAGCCTGGACCGGCTGGAGCCCGGGGAGGAGGAGGCGGCCGAGGATGAAGTTGCCATATGCCCTTATGATTCCAATCATCACATGCCTAAGTCGTCTTTAGCAAAGCACATGGTATCTTGTAGATTGAGGAAACTGGGCTATACCAAAGAAGAAGAGGATAAAATGTATAATTCTGACTTTTTCTATGAGAATGCGAAGATACCTTCAGTTACCTTGAATAAGGACTCACAATTCCAGATAATTAAACAAGCTAGAGATGCAGTTGGAAACGATGGTGATTATTATAATCAAAGGATGTATTCTTCATTGCCTGTTGAAGTTCCTCTGAATCACAAACGGTTTGTTTGTGATCTAACCCAAGCCGATCGTCTTGCCCTCTATGATTTTGTAATCGAGGAGACAAAGAAAAAGCGCTCAGATTCTCAAAGTATTGAAAATGACAGCGATCTCTTTGTAGACTTGGCTGCCAAAGTCAATCAAGATAATAGTCGAAAAAGTCCAAAATCTTACCTTGAAATCCTGGCAGAAGTGAGAGATTATAAAAGAAGACGCCAGTCCTATAGAGCTAAGAATGTTCACATAACCAAGAAATCATATACTGAGGTAAGTTTTACATAA

Related Sequences

bmy_00858T0 Protein

Length: 244 aa      View alignments
>bmy_00858T0
MEGEPPPVEERRRLREELSEFVESCCRTLEEVTASLGWSLDRLEPGEEEAAEDEVAICPYDSNHHMPKSSLAKHMVSCRLRKLGYTKEEEDKMYNSDFFYENAKIPSVTLNKDSQFQIIKQARDAVGNDGDYYNQRMYSSLPVEVPLNHKRFVCDLTQADRLALYDFVIEETKKKRSDSQSIENDSDLFVDLAAKVNQDNSRKSPKSYLEILAEVRDYKRRRQSYRAKNVHITKKSYTEVSFT*