Part of scaffold_18 (Scaffold)

For more information consult the page for scaffold_18 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PDLIM2 ENSTTRG00000012750 (Bottlenosed dolphin)

Gene Details

PDZ and LIM domain 2 (mystique)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000012097, Bottlenosed dolphin)

Protein Percentage 66.29%
cDNA percentage 68.31%
Ka/Ks Ratio 0.32222 (Ka = 0.0284, Ks = 0.0882)

PDLIM2 ENSBTAG00000007369 (Cow)

Gene Details

PDZ and LIM domain protein 2

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000009697, Cow)

Protein Percentage 89.15%
cDNA percentage 89.53%
Ka/Ks Ratio 0.15166 (Ka = 0.0534, Ks = 0.3523)

PDLIM2  (Minke Whale)

Gene Details

PDZ and LIM domain 2 (mystique)

External Links

Gene match (Identifier: BACU001984, Minke Whale)

Protein Percentage 96.27%
cDNA percentage 97.89%
Ka/Ks Ratio 0.42721 (Ka = 0.0166, Ks = 0.0388)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 807 bp    Location:1944998..1932385   Strand:-
>bmy_00939
ATGGCGCTGACGGTGGACGTGGTGGGACCCGCACCCTGGGGCTTCCGCATCTCGGGCGGCAGGGATTTCCACACGCCTATCATGGTGACCAGGGTAACTGAGCAGGGCAAGGCCGAAGCTGCTGACCTCCGGCCTGGTGACATTATTGTGGCCATCAATGGTGAGAGCGCGAAGAGCATGCTGCATGCCGAGGCCCAGAGCAAGATCCGCCAGAGCCCCTCACCCCTGAGGCTGCAGCTGGACCGGCCTCAGGCTGCCTCTCCTGGGCAGACCAACGGGGAAAGCTCCCCCGAAGTGCTGGCCGCTCGCTTCCAGGGCTCCAGGAGGACACACACCGACAGCCAGTCCTCCCTGCGGTCTTCCTGCTCCAGCCAGGCCTCCCTCAGCCCCCGGCCAGGCAGCCCCTTCTCCACCCTGCCCGCTGCCAGCCCCCAGGCCCCCGCGGGAGAGGTGGTGACCAGCCACAGTTTCCAGAGCCTGGCGTACTCCCCGGAACCCACTACTGCTGACCACTTGTCCTACAGGGGCCGCCCTGGAAGCCGACAGGCCGGCCTGGGCCCCGCTGGCGACTCGGCTGTGCTGGTGCTGCCGCCACCGCCTTCCCCAGGTCCCCGTTCCTCCAGCCCTAGGCTCAGCGTGGCCTCGGAAGGGGAAAGCCACCTCCTGAGAGAGGACTCAGAAGTCTTCAAGATGCTGCAGGAAAATCGCGAGGCACGGGTGGCCCCCCGGCAGTCCAGCTCTTTTCGGCTCTTGCAGGAAGCCCTGGAGGCTGAGGAGAGAGATGGCACTGCTGTGGACGAGCTCTGA

Related Sequences

bmy_00939T0 Protein

Length: 269 aa     
>bmy_00939T0
MALTVDVVGPAPWGFRISGGRDFHTPIMVTRVTEQGKAEAADLRPGDIIVAINGESAKSMLHAEAQSKIRQSPSPLRLQLDRPQAASPGQTNGESSPEVLAARFQGSRRTHTDSQSSLRSSCSSQASLSPRPGSPFSTLPAASPQAPAGEVVTSHSFQSLAYSPEPTTADHLSYRGRPGSRQAGLGPAGDSAVLVLPPPPSPGPRSSSPRLSVASEGESHLLREDSEVFKMLQENREARVAPRQSSSFRLLQEALEAEERDGTAVDEL*