Part of scaffold_18 (Scaffold)

For more information consult the page for scaffold_18 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LGI3 ENSTTRG00000012065 (Bottlenosed dolphin)

Gene Details

leucine-rich repeat LGI family, member 3

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011434, Bottlenosed dolphin)

Protein Percentage 94.53%
cDNA percentage 94.77%
Ka/Ks Ratio 0.21679 (Ka = 0.0049, Ks = 0.0227)

LGI3 ENSBTAG00000004578 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000006011, Cow)

Protein Percentage 93.89%
cDNA percentage 90.49%
Ka/Ks Ratio 0.10072 (Ka = 0.0391, Ks = 0.3879)

LGI3  (Minke Whale)

Gene Details

leucine-rich repeat LGI family, member 3

External Links

Gene match (Identifier: BACU001990, Minke Whale)

Protein Percentage 99.62%
cDNA percentage 99.17%
Ka/Ks Ratio 0.04903 (Ka = 0.0016, Ks = 0.0331)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1812 bp    Location:2351084..2359899   Strand:+
>bmy_00952
GGCTCGGCTCGCGGGAGCGAGCAGGGGAGGGGACGGCAGCCGGCGCCCGAGGGCCCGAGGAGTCGCTCTCCGCAGCAGGCAGCTGCGGCCCTAGCTGCGGCAGCGGCTGCCTGTGGCGCCCGCGCCGGGTGGCCGAGAGCGGTGGGGCGGGAGCTCGCAGGCAGCATGGCGGGGCTGCGGGCCAGGCTGGGCTCGGGGCTCGGGCTGCTGGCGCTGTCCACGCTGGGCCTCTGCCTAATGCTGCAAGTCGGCGCCAGGAGGCCCCCCAAGACGCCCCCGTGCCCGCCCAGCTGCTCCTGCACCAGGGACACCGCCTTCTGCGTGGACTCTAAGGCAGTGCCCAGGAACCTGCCCTCCGAGGTCATCTCTCTGACGCTGGTGAATGCTGCCTTTTCGGAGATCCAGGATGGAGCATTTTCCCACTTGCCACTGCTGCAGTTCCTGTTACTCAATTCCAACAAGTTTACACTGATTGGAGACAATGCCTTCACAGGACTATCTCACCTGCAGTACCTCTTCATTGAGAACAATGACATCTGGGCACTTTCCAAGTTTACCTTCAGAGGACTCAAGTCTTTGACACACCTCTCACTGGCCAACAATAACCTGCAGACACTGCCTAGAGACATCTTTCGGCCCCTGGACATCCTGAGTGACTTGGACCTGCGGGGCAACTCGCTCAACTGTGACTGCAAGGTGAAGTGGCTGGTGGAGTGGCTGGCACACACCAACACCACGGTGGCGCCCATCTACTGCGCCAGCCCGCCCCGCTTCCAAGAGCACAAGGTGCAGGATCTGCCGCTGCGGGAGTTCGACTGCATCACCACAGATTTCGTGCTGTACCAGACCCTGTCCTTCCCAGCGGTGTCGGCCGAGCCCTTCCTTTACTCGAGTGACCTCTATTTGGCTTTGGCCCAGCCAGGAGCCAGCGCTTGCACCATCCTCAAGTGGGACTATGTTGAAAGGCAGCTTCGAGACTATGATAGAATCCCAGCCCCCTCTGCAGTGCACTGCAAGCCGATGGTGGTGGACAGCCAGCTGTATGTGGTGGTGGCCCAGTTGTTTGGTGGCTCTTACATTTACCACTGGGACCCCAACACCACGCGCTTCACCAAGCTGCAGGACATCGACCCTCAGCGCGTGCGCAAGCCCAATGACCTCGAGGCCTTCCGCATCGATGGCGACTGGTACTTTGCCGTGGCTGACAGCTCCAAGGCGGGGGCCACCAGCCTCTACCGCTGGCACCAGAACGGCTTCTACTCCCACCAGGCCCTGCATGCCTGGCACCGTGACACTGACCTGGAATTTGTAGAYGGCGAGGGCAAGCCACGCCTGATCGTGTCCAGCAGCTCCCAGGCCCCCGTCATCTATCAGTGGAGTCGCACCCAGAAGCAGTTTGTGGCCCAGGGCGAGGTGACCCAGGTGCCTGATGCCCAGGCTGTGAAACACTTCCGTGCAGGTCGCGACAGCTACCTGTGCCTCAGCCGCTACATCGGCGACTCCAAGATCCTGCGCTGGGAGGGCACCCGCTTCTCCGAGGTGCAGGCGCTGCCCTCCAGGGGCTCGCTGGCCCTGCAGCCCTTCCTGGTGGGTGGCCGCCGCTACCTGGCGCTGGGCAGCGACTTCTCCTTCACACAGATCTACCAGTGGGATGAGGGGCGGCAGAAGTTTGTGCGGTTCCAGGAGCTGGCGGTGCAGGCCCCTCGGGCCTTCTGCTACATGCCTGCTGGGGACGCCCAGCTGCTCCTGGCCCCCAGCTTCAAGGGACAGACACTTGTGTACCGACACGTGGTGGTGGATCTCAGTGCCTAG

Related Sequences

bmy_00952T0 Protein

Length: 604 aa      View alignments
>bmy_00952T0
GSARGSEQGRGRQPAPEGPRSRSPQQAAAALAAAAAACGARAGWPRAVGRELAGSMAGLRARLGSGLGLLALSTLGLCLMLQVGARRPPKTPPCPPSCSCTRDTAFCVDSKAVPRNLPSEVISLTLVNAAFSEIQDGAFSHLPLLQFLLLNSNKFTLIGDNAFTGLSHLQYLFIENNDIWALSKFTFRGLKSLTHLSLANNNLQTLPRDIFRPLDILSDLDLRGNSLNCDCKVKWLVEWLAHTNTTVAPIYCASPPRFQEHKVQDLPLREFDCITTDFVLYQTLSFPAVSAEPFLYSSDLYLALAQPGASACTILKWDYVERQLRDYDRIPAPSAVHCKPMVVDSQLYVVVAQLFGGSYIYHWDPNTTRFTKLQDIDPQRVRKPNDLEAFRIDGDWYFAVADSSKAGATSLYRWHQNGFYSHQALHAWHRDTDLEFVDGEGKPRLIVSSSSQAPVIYQWSRTQKQFVAQGEVTQVPDAQAVKHFRAGRDSYLCLSRYIGDSKILRWEGTRFSEVQALPSRGSLALQPFLVGGRRYLALGSDFSFTQIYQWDEGRQKFVRFQELAVQAPRAFCYMPAGDAQLLLAPSFKGQTLVYRHVVVDLSA*