Part of scaffold_19 (Scaffold)

For more information consult the page for scaffold_19 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PDGFB ENSTTRG00000001264 (Bottlenosed dolphin)

Gene Details

platelet-derived growth factor beta polypeptide

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000001187, Bottlenosed dolphin)

Protein Percentage 97.5%
cDNA percentage 98.06%
Ka/Ks Ratio 0.23363 (Ka = 0.0109, Ks = 0.0467)

PDGFB ENSBTAG00000021697 (Cow)

Gene Details

platelet-derived growth factor subunit B precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000056346, Cow)

Protein Percentage 94.17%
cDNA percentage 93.75%
Ka/Ks Ratio 0.14505 (Ka = 0.0315, Ks = 0.217)

PDGFB  (Minke Whale)

Gene Details

platelet-derived growth factor beta polypeptide

External Links

Gene match (Identifier: BACU013378, Minke Whale)

Protein Percentage 99.58%
cDNA percentage 99.17%
Ka/Ks Ratio 0.06241 (Ka = 0.0018, Ks = 0.0283)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 726 bp    Location:161889..141542   Strand:-
>bmy_00968
ATGAATCGCTGCTGGGCGCTCTTCCTGTCTCTCTGCTGCTACCTGCGTCTGGTCAGCGCCGAGGGGGACCCCATTCCCGAGGAGCTCTACGAGATGCTGAGTGACCACTCCATTCGTTCCTTCGATGACCTCCAGCGCCTGCTGCACGGAGACTCCGGAGATGAAGACGGGGCTGAATTGGACCTGAATTTGACCCGGTCCCATTCTGGAGGCGAGCTGGATAGCTTATCCCGCGGGAGAAGGAGCCTAGGTTCCCCGACAGTCGCTGAGCCAGCCGTGATCGCCGAGTGCAAGACACGCACCGAGGTGTTTGAGATCTCGCGGCGCCTCATAGACCGCACCAACGCCAACTTCCTGGTGTGGCCGCCCTGCGTGGAGGTGCAGCGCTGCTCCGGCTGCTGCAACAACCGCAATGTGCAGTGCCGCGCCACGCAGGTGCAGCTGCGGCCCGTTCAGGTAAGAAAGATTGAGATTGTGCGGAAGAAGCCAACCTTTAAGAAGGCCACGGTGACCTTGGAGGACCACCTGGCGTGCAAGTGTGAGACGGTGGTGGCACGACCCGTGACCCGAAGTCCYGGGAGTTCCCAGGAGCAGCGAGCAGCCAGGACGCCCCAAACTCGGGTGACCATTCGGACGGTGCGAGTCCGCCGGCCCCCCAAGGGGAAGCACCGGAAGTTCAAGCACACGCATGACAAGAAGGCACTGAAGGAGACCCTCGGAGCCTAG

Related Sequences

bmy_00968T0 Protein

Length: 242 aa      View alignments
>bmy_00968T0
MNRCWALFLSLCCYLRLVSAEGDPIPEELYEMLSDHSIRSFDDLQRLLHGDSGDEDGAELDLNLTRSHSGGELDSLSRGRRSLGSPTVAEPAVIAECKTRTEVFEISRRLIDRTNANFLVWPPCVEVQRCSGCCNNRNVQCRATQVQLRPVQVRKIEIVRKKPTFKKATVTLEDHLACKCETVVARPVTRSPGSSQEQRAARTPQTRVTIRTVRVRRPPKGKHRKFKHTHDKKALKETLGA*