Part of scaffold_19 (Scaffold)

For more information consult the page for scaffold_19 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TNFRSF13C ENSTTRG00000017353 (Bottlenosed dolphin)

Gene Details

tumor necrosis factor receptor superfamily, member 13C

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000016444, Bottlenosed dolphin)

Protein Percentage 92.93%
cDNA percentage 94.93%
Ka/Ks Ratio 0.27456 (Ka = 0.0329, Ks = 0.1197)

TNFRSF13C ENSBTAG00000026489 (Cow)

Gene Details

tumor necrosis factor receptor superfamily member 13C

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000037486, Cow)

Protein Percentage 75.19%
cDNA percentage 83.2%
Ka/Ks Ratio 0.28297 (Ka = 0.1385, Ks = 0.4895)

TNFRSF13C  (Minke Whale)

Gene Details

tumor necrosis factor receptor superfamily, member 13C

External Links

Gene match (Identifier: BACU020570, Minke Whale)

Protein Percentage 96.79%
cDNA percentage 97.86%
Ka/Ks Ratio 0.38657 (Ka = 0.015, Ks = 0.0389)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 657 bp    Location:2408919..2407439   Strand:-
>bmy_01018
ATGGGCTTTGGCAGCATGAGGCGAGGGGCGAGGGGCCTGAGGGGCAGAGACAGGCCGGCCGCCCCGCAGTGCCTGCAGACCCAGTGCTTCGACCCGCTGGTTCGCAAATGTGTGGCCTGCAGTCTCCTCCGGACAACAGAGCCTAGACCGGCCTCGCCTCCCTCCGACCCTCCCCCTCCCCGCTCCTCTCTCCCCTCTGCCCCGTGCTCTGCCTGCCCGTCCCCTCCAGCAGGCGGCCCGAGCAGCCTGGCGCCCGGGACGGTGCTGCAGCCGCAAGAGTCGGTGGGCCCGGGGGCCACCGCCGAGGCCGAGGCCGCGCTGCCACTCCCGGCGCTGCTCTTCGGCGCCCCCGCGCTGCTGGGCCTGGCGCTGGCCCTGGTCCTGCTGGGCCTGGTGAGCGGGAGGCGCCGACGGCGACGGCCCGGCGCGGCGGCTGCCCCAGAGGCCCCGGAGGCCCCGGATGGAGACCAGGCTGAGCCCCTGGACAGTGACAGCATCCTCTCCCCGGGAACCCTGGATGCCACAGCTCCCATCTGGCTTCCGCCCAGTGAAGACCCAGCTACCACCCCACCTGCCCACAGCGTCCCTGTGCCAGCCACAGAGCTGGGTTCCACTGAGCTGGTGACCACTAAGACTGCCGGCCCGGAGCAACCGTAG

Related Sequences

bmy_01018T0 Protein

Length: 219 aa      View alignments
>bmy_01018T0
MGFGSMRRGARGLRGRDRPAAPQCLQTQCFDPLVRKCVACSLLRTTEPRPASPPSDPPPPRSSLPSAPCSACPSPPAGGPSSLAPGTVLQPQESVGPGATAEAEAALPLPALLFGAPALLGLALALVLLGLVSGRRRRRRPGAAAAPEAPEAPDGDQAEPLDSDSILSPGTLDATAPIWLPPSEDPATTPPAHSVPVPATELGSTELVTTKTAGPEQP*