Part of scaffold_21 (Scaffold)

For more information consult the page for scaffold_21 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRIM54 ENSTTRG00000012514 (Bottlenosed dolphin)

Gene Details

tripartite motif containing 54

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011873, Bottlenosed dolphin)

Protein Percentage 93.73%
cDNA percentage 95.7%
Ka/Ks Ratio 0.45726 (Ka = 0.037, Ks = 0.0809)

TRIM54 ENSBTAG00000018267 (Cow)

Gene Details

Tripartite motif-containing protein 54

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000024312, Cow)

Protein Percentage 90.82%
cDNA percentage 90.59%
Ka/Ks Ratio 0.16568 (Ka = 0.0549, Ks = 0.3316)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1311 bp    Location:1767441..1772329   Strand:+
>bmy_01080
ATGACTCACTGTGCCTTTCTCTCACGCTCCCCGTCCCCACAGGCCTCAAACCCTCTGTGGCAATCCCGGGGCTCCACCACTGTGTCTTCAGGAGGCCGTTTCCGCTGCCCGTCTTGCAGGCATGAGGTTGTCCTGGACCGACATGGTGTCTATGGCCTGCAGCGGAACCTGCTAGTGGAGAACATTATCGACATTTACAAGCAGGAGTCCTCCCGGCCGCTGCATTCCAAGGCTGAGCAGCACCTCATGTGCGAGGAGCATGAAGATGAGAAGATCAATATCTACTGCCTGAGCTGTGAAGTGCCCACTTGCTCTCTCTGCAAGGTCTTCGGCGCCCACAAGGACTGTGAGGTGGCCCCACTGCCCACCATTTACAAACGCCAGAAGAGTGAGCTCAGTGATGGCATCTCGATGCTGGTGGCAGGCAATGACCGTGTGCAAGCAGTGATCACGCAGATGGAGGAGGTGTGCCAGACCATTGAGAGGTTTGAGGCCCTGTGCGCAGTTCTGGAGGAGCGTAAGGGTGAGCTGCTGCAGGCGCTGGCCCGGAAGCAGGAGGAGAAGCTGCAGCGAGTCAGGGGCCTCATCCGCCAGTACGGAGACCACCTGGAGGCCTCCTCTAAGCTGCAGGCCAAGGAGCTGATCAATAAGGTCGGGACAATGTCAAAGGTGGAGCTGGCTGGACGGCCGGAGCCGGGCTATGAAAGCATGGAGCAATTCACCGTGAGCGTGGAGCATGTGGCCGAAATGCTGAGGACCATCGACTTCCAGCCAGGCGCTTCTGGGGAGGAAGAGGATGAGGAGGTAGCGTTGGACGGGGAAGAGGGCAGCGCAGGGCCAGAGGAAGAGCGGCTGGAGGGGCCGGAAGGTGAGTGTGGGCATTGGCGGGGTCTGGCTGGTACGGCCCCTCCCCCGGCGATCTCCCTCTCTGCTGCATCAGGGATCGCTTGGGGCCCCTACTCCCAACCTCAACCAGGAGGGGTGCGCCCCCTAGCGCGCGTGCTGAAGTACAACTTTCTTTCCCACCATCCATTCCTCTTGGGGTTTGGGAGTCCGAGTTGGGTGGGGAAGTGGAGGAGAAACCCTCCTGGCTGGGGAAAGGGAGTGATCTGGGCTTCGGAGTTGCCTTGTCTCTTTGGAGCGCCCGCCCACCGAGCTTTCTTTCCCGTGGACAGGCCTGCACTGACTCGCCCCTGTTGGGGAGGCTGCGCACCCGCGGCCTGGCGCTCAGGTGATGAAGGACCTGAGCAGGGACCACCCGCCACCCAGCTCGGAGCGCCGCCGCGGGGGAGGGGCTCAATAAAGGGCTAA

Related Sequences

bmy_01080T0 Protein

Length: 437 aa      View alignments
>bmy_01080T0
MTHCAFLSRSPSPQASNPLWQSRGSTTVSSGGRFRCPSCRHEVVLDRHGVYGLQRNLLVENIIDIYKQESSRPLHSKAEQHLMCEEHEDEKINIYCLSCEVPTCSLCKVFGAHKDCEVAPLPTIYKRQKSELSDGISMLVAGNDRVQAVITQMEEVCQTIERFEALCAVLEERKGELLQALARKQEEKLQRVRGLIRQYGDHLEASSKLQAKELINKVGTMSKVELAGRPEPGYESMEQFTVSVEHVAEMLRTIDFQPGASGEEEDEEVALDGEEGSAGPEEERLEGPEGECGHWRGLAGTAPPPAISLSAASGIAWGPYSQPQPGGVRPLARVLKYNFLSHHPFLLGFGSPSWVGKWRRNPPGWGKGVIWASELPCLFGAPAHRAFFPVDRPALTRPCWGGCAPAAWRSGDEGPEQGPPATQLGAPPRGRGSIKG*