Part of scaffold_21 (Scaffold)

For more information consult the page for scaffold_21 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SNX17 ENSTTRG00000012519 (Bottlenosed dolphin)

Gene Details

sorting nexin 17

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011878, Bottlenosed dolphin)

Protein Percentage 99.56%
cDNA percentage 98.83%
Ka/Ks Ratio 0.05701 (Ka = 0.0021, Ks = 0.0367)

SNX17 ENSBTAG00000019515 (Cow)

Gene Details

Sorting nexin-17

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000025998, Cow)

Protein Percentage 99.36%
cDNA percentage 96.24%
Ka/Ks Ratio 0.02173 (Ka = 0.003, Ks = 0.1398)

SNX17  (Minke Whale)

Gene Details

sorting nexin 17

External Links

Gene match (Identifier: BACU019956, Minke Whale)

Protein Percentage 99.78%
cDNA percentage 99.49%
Ka/Ks Ratio 0.04389 (Ka = 0.0009, Ks = 0.0213)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1530 bp    Location:1818051..1823805   Strand:+
>bmy_01085
AAGTCCCCCCCAAAATGGCGAGCGAGGCTGCGGGGACGCGCTGAGGAGCGGAGGCGAGCGTGCAAAGCCGCTGTGGCCCTCACAGTCCGGACCCGGCCGGGCCCTGCCGCAGGGAACATGCACTTTTCCATTCCTGAAACCGAGTCCCGCAGCGGGGACAGCGGCGGCTCCGCCTACGTGGCCTATAACATTCACGTGAATGGAGTCCTGCACTGTCGGGTGCGCTACAGCCAGCTCCTGGGGCTGCACGAGCAGCTTCGGAAGGAATATGGGGCCAATGTGCTTCCTGCATTTCCCCCAAAGAAGCTTTTCTCTCTGACACCCGCTGAGGTAGAACAGAGGAGAGAGCAGTTAGAGAAGTACATGCAAGCTGTTCGGCAAGACCCATTGCTTGGGAGCAGTGAGACCTTCAATAGTTTCCTGCGTCGGGCGCAACAGGAGACACAGCAGGTCCCAACAGAAGAGGTCTCCTTGGAAGTGCTGCTTAGCAACGGGCAGAAAGTTCTGGTCAATGTGCTAACTTCCGATCAGACTGAGGATGTCCTGGAGGCTGTGGCTGCAAAGCTGGATCTTCCAGATGACTTGATCGGATACTTTAGTCTCTTTCTAGTTCGAGAAAAAGAGGATGGAGCCTTTTCGTTTGTACGGAAGTTGCAAGAGTTTGAGCTGCCTTATGTGTCTGTTGCCAGTCTTCGGAGTCAAGAGTATAAGATAGTGCTAAGGAAGAGTTATTGGGACTCTGCCTATGATGACGATGTCATGGAGAACCGGGTTGGCCTGAACCTGCTTTATGCTCAGACAGTATCAGACATTGAGCGTGGGTGGATCCTAGTCACCAAGGAGCAGCACCGGCAGCTCAAATCACTGCAAGAGAAGGTCTCCAAGAAGGAGTTCCTGCGGCTGGCCCAGACACTGCGGCACTATGGCTACTTGCGCTTCGATGCCTGTGTGGCTGACTTCCCGGAGAAGGACTGTCCGGTGGTGGTGAGCGCAGGCAACAGTGAGCTCAGCCTCCAGCTCCGCCTGCCTGGCCAGCAACTCCGTGAAGGCTCCTTCCGGGTCACCCGCATGCGGTGCTGGCGGGTCACCTCCTCTGTGCCACTGCCCAGTGGAGGCACAAGCAGCCCAGGTCGGGGCCGGGGTGAGGTGCGCCTGGAACTGGCTTTTGAATACCTCATGAGCAAGGACCGGCTACAGTGGGTCACCATCACCAGCCCCCAGGCTATCATGATGAGCATCTGCTTGCAGTCCATGGTAGATGAACTGATGGTGAAGAAATCCGGCGGCAGCATCAGAAAGATGCTACGCCGGCGGGTGGGGGGCACCCTGAGACGCTCAGACAGCCAGCAAGCAGTGAAGTCCCCACCGCTGCTTGAGTCACCTGATGCCAGCCGGGAGTCCATGGTCAAACTCTCAAGCAAGCTGAGTGCCGTGAGCTTGCGGGGGATTGGCACTCCCAGTACAGATGCCAGTGCCAGTGATGTCCACGGCAATTTCGCCTTTGAGGGCATTGGAGACGAGGATCTGTGA

Related Sequences

bmy_01085T0 Protein

Length: 510 aa      View alignments
>bmy_01085T0
KSPPKWRARLRGRAEERRRACKAAVALTVRTRPGPAAGNMHFSIPETESRSGDSGGSAYVAYNIHVNGVLHCRVRYSQLLGLHEQLRKEYGANVLPAFPPKKLFSLTPAEVEQRREQLEKYMQAVRQDPLLGSSETFNSFLRRAQQETQQVPTEEVSLEVLLSNGQKVLVNVLTSDQTEDVLEAVAAKLDLPDDLIGYFSLFLVREKEDGAFSFVRKLQEFELPYVSVASLRSQEYKIVLRKSYWDSAYDDDVMENRVGLNLLYAQTVSDIERGWILVTKEQHRQLKSLQEKVSKKEFLRLAQTLRHYGYLRFDACVADFPEKDCPVVVSAGNSELSLQLRLPGQQLREGSFRVTRMRCWRVTSSVPLPSGGTSSPGRGRGEVRLELAFEYLMSKDRLQWVTITSPQAIMMSICLQSMVDELMVKKSGGSIRKMLRRRVGGTLRRSDSQQAVKSPPLLESPDASRESMVKLSSKLSAVSLRGIGTPSTDASASDVHGNFAFEGIGDEDL*