Part of scaffold_21 (Scaffold)

For more information consult the page for scaffold_21 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

IFT172 ENSTTRG00000012524 (Bottlenosed dolphin)

Gene Details

intraflagellar transport 172 homolog (Chlamydomonas)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011885, Bottlenosed dolphin)

Protein Percentage 96.45%
cDNA percentage 96.34%
Ka/Ks Ratio 0.2028 (Ka = 0.007, Ks = 0.0347)

IFT172 ENSBTAG00000018157 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000024164, Cow)

Protein Percentage 97.54%
cDNA percentage 95.22%
Ka/Ks Ratio 0.07684 (Ka = 0.0121, Ks = 0.157)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 5298 bp    Location:1918179..1875961   Strand:-
>bmy_01090
ATGCAGTTGAAGCACCTGAGGACCCTGCTGAGCCCCCAGGATGGAGCTGCAAAGGTCACCTGCATGGCATGGTCCCAGAACAATGCCAAATTTGCTGTCTGCGCAGTGGACCGAGTGGTGTTGCTGTATGATGAACATGGGGAGCGAAGAGATAAATTCTCCACCAAACCAGCCGACATGAAGTATGGCAGGAAGAGCTATATGGTGAAGGGCATGGCTTTTTCTCCTGATTCCACCAAGATTGCCATAGGACAGACTGACAACATCATCTATGTCTACAAGATTGGAGAAGATTGGGGTGACAAGAAAGTCATCTGTAACAAGTTCATCCAGACGAGTGCTGTTACTTGTCTGCAGTGGCCAGCAGAATACATCATTGTCTTTGGACTGGCTGAAGGGAAGGTTCGTTTAGCAAACACCAAAACTAATAAATCATCTACCATCTATGGGACAGATTCTTACGTGGTGTCCCTGACAACGAATTGCTCTGGGAAAGGAATTCTCTCTGGTCATGCAGATGGCACCATTGTTAGGTATTTCTTTGATGATGAAGGCTCTGGAGAGTCACAGGGGAAGTTGGTGAACCACCCATGCCCACCCTATGCCTTGGCTTGGGCAACCAACAGCATTGTGGCTGCAGGCTGTGATCGGAGGATTGTGGCCTATGGAAAGGAAGGCCACGTGCTACAAACTTTTGACTATAGCCGTGACCCTCAGGAACGGGAGTTCACCACAGCTGCAGCAAGTCCTGGGGGCCAGTCTGTTGTGCTGGGAAGTTATGACAGACTTCGGGTACTCAACTGGAGCCCTCGAAGAAGCATCTGGGAAGAGGCAAAGCCCAAGGAGATTGCCAACTTATACACCATCACTGCCTTGGCCTGGAAGCGGGATGGCTCACGACTCTGTGCGGGCACACTCTGTGGTGGAGTGGAACAGTTTGACTGCTGCCTCCGAAGGAGCATTTACAAGAATAAGTTTGAGTTGACGTATGTGGGACCTAGCCAGGTGATTGTGAAGAACCTCTCATCGGGGACCCGAGTGGTACTCAAGTCACACTATGGCTATGAGGTGGAAGAGGTGAAAATCCTGGGAAAGGAACGCTACCTGGTGGCCCACACGTCAGACACATTGTTGCTGGGGGACCTGAACACTAATCGCCTTAGTGAGGTAGGAACCAAAAATGGAGAGGTAGCTTGGCAGGGATCTGGTGGCAATGAGAAGTATTTCTTTGAAAATGAAAATGTATGCATGATCTTCAATGCTGGAGAGCTAACCCTGGTGGAATATGGGAGTAATGATACCCTGGGTTCTGTACGTACTGAATTCATGAACCCCCATCTCATCAGTGTCCGTATTAATGAGAGGYGCCAGCGAGGAATGGAGGATAATAAGAAATTGGCTTATCTTGTTGATATTAAGACTATTGCTGTAGTGGACCTGATTGGTGGCTACAACATTGGCACCATCAGCCATGAGAGCCGTGTGGATTGGCTGGAACTTAATGAGACTGGGCACAAGCTTCTCTTCAGGGACCGGAAACTTCGTTTGCACCTGTACGACATTGAAAGCTGCTCTAAGACAATGATCCTCAGCTTCTGCTCCTACGTGCAGTGGGTCCCAGGAAGTGATGTGCTGGTAGCTCAGAACCGAAACAACTTGTGTGTGTGGTACAACATTGAGGCACCTGAGAGAGTCACCATGTCCTCTATCAGGGGTGATGTTGTAGGTCTGGAGCGGGGCGGGGGAAAGACCGAGGTGATGGTGACTGAAGGTGTGACTACAGTTGCCTACACACTGGATGAGGGCCTTATTGAGTTTGGAACAGCCATTGATGACGGCAACTACACCAGGGCAGCAGCCTTCTTAGAGACTCTGGAAATGACCCCAGAAACAGAGGCAATGTGGAAAACCTTGAGTAAGCTGTCACTGGAAGCAAGGCAGCTACACATTGCTGAGAGGTGCTTTTCTGCTTTGGGCCATGTAGCAAAAGCTCGATTCCTACATGAGACCAATGAGATTGCAGATCAAGTGTCTCGGGAATATGCAAGTATTCTCCTCCTGATTCGTTCAGGTGGAGAAGGAACAGACTTTTATCAGGTCCGAGCACGTCTAGCCATGCTGGAGAAGAACTACAAGCTGGCCGAAATGATCTTCTTAGAACAGAACGCTGTTGAGGAGGCCATGGACATGTACCAGGAGCTACACCGTTGGGACGAATGTATCGCTGTGGCTGAGGCCAAGGGGCACCCAGCCCTAGAGAAGCTGCGCCGGGGTTACTACCAGTGGCTGATGGACACACAGCAAGAGGAGCGAGCAGGCGAACTTCAGGAGAGCCAAGGGGATGGGCTAGCAGCCATCAGCCTCTACCTCAAAGCTGGGCTCCCTGCCAAAGCTGCTCGGCTGGTGCTGACCCGAGAGGAGCTGCTGGCCACCACAGAGCTGGTAGAGCACATCACTGCAGCCCTTATCAAGAGCGAACTGTATGAAAGGGCAGGTGATCTCTTTGAGAAGATTCGAAATCCACAGCGGGCCCTGGAGTGCTACCGTAAAGGCAACGCGTTCATGAAAGCGGTGGAGCTGGCTCGATTGGCATTCCCAGTGGAGGTGGTGAGACTAGAGGAGGCGTGGGGGGACCACTTGGTGCAGCAGAAGCAGCTTGATGCGGCCATTAATCACTACATTGAAGCCAGGTGCTCCATTAAGGCAATCGAGGCTGCCCTGGGTGCCCGCCAGTGGAAGAAGGCAATTTATATATTAGATCTACAGGACCAGAACACTGCGTCCAAATACTATCCTCGTGTGGCCCAACACTATGCGTCTCTGCAGGAGTATGAGATTGCTGAGGAGCTCTACACTAAGGGAGACCGGACGAAAGATGCCATAGACATGTACACCCAGGCTGGCCGCTGGGAGCAAGCCCACAAGCTGGCAATGAAGTGCATGAGACCAGAAGATGTGTCGGTGCTGTACATCACCCAGGCTCAGGAGATGGAGAAGCAGGGCAAGTACCGAGAGGCTGAAAGGCTATATGTGACAGTGGAAGAGCCTGATCTTGCCATCACCATGTTCAAAAAGCACAAGTTGTATGATGATATGATCCGCCTAGTAGGGAAGCACCACCCAGATCTCCTCAGCGACACACACCTACATCTGGGCAAGGAGCTGGAGGCTGAAGGCCGACTACAGGAGGCTGAATATCACTACCTCGAGGCCCAGGAGTGGAAGGCAACAGTGAATATGTACCGGTCCAGTGGGCTTTGGGAAGAGGCCTACCGGGTGGCCAAGGCTCACGGAGGAGCTAATGCCCACAAACACGTGGCCTATCTGTGGGCAAAGAGCCTGGGAGGTGAGGCTGCAGTTAGACTGCTCAATAAGCTGGGACTCCTGGAAGCTGCTATTGACCATGCTGCTGACAACTGCTCCTTTGAATTTGCTTTTGAACTCTCTCGGCTGGCCCTCAAGCACAAAACTCCTGAGATTCATCTCAGATACGCTATGTTCCTGGAGGATGAGGGAAAATTTGAAGAGGCTGAAGCTGAATTCATCAGGGCTGGTAAACCCAAGGAAGCAGTCCTCATGTTTGTCCATAACCAGGATTGGGAGGCAGCTCAGCGTGTGGCCGAGGCCCACGACCCTGACAGCGTCACTGAGGTGCTCATGGGGCAGGCCCGGGGGGCCTTGGAGGAGAAGGACTTCCAGAAAGCAGAAGGGCTGCTGCTTCGGGCCCAGAGACCAGGCCTGGCCCTCAGTTACTATAAGGAGGCTGGACTATGGAGCGATGCCCTGCGGATCTGCAAGGACTACATGCCTAGCCAGCTGGAGGCACTGCAGGAAGAGTATGAGCGGGAAGCTACCAAGAAGGGGGCCAGGGGCATGGAAGGACTGGTGGAACAGGCTCGACAGTGGGAGCAGGCTGGAGAATACAGCCGTGCAGTCGACTGTTACCTCAAAGTGCGGGATGCAGGGAGCAGCAGCCTGGTGGAGAAGTGCTGGATGAAGGCAGCTGAACTCTCCATCAAGTTTCTACCTCCCCAACGCAGTCTGGAAGTAGTTCGGGCTGTGGGACCCCAGCTGATTGGAATTGGAAAGCACAGTGCAGCTGCAGAGCTCTATCTGAACCTGGACCTAGTCAAGGAAGCGATCGATGCTTTCCTTGAGGGTGAGGAATGGAACAAGGCCAAGCGTGTGGCTAAGGAGTTAGATCCCCGGTATGAAGACTATGTGGACCAGCATTATAAAGAGTTCCTCAAGAACCAGGGCAAAGTGGACTCGCTGGTGGGTGTGGATGTGGCGGCTGCTTTGGACCTGTATGTGGAGCAGGGCCAGTGGGACAAGTGTGTTGAAACAGCTACCAAGCAGAACTACAAGATTCTGCACAAGTACGTGGCTTTGTATGCAACTCACCTGATCCGAGAGGGTGGCTATGCCCAGGCACTGGCCCTGTATGTGCAACACGGAGCCCCTGCTAACCCACAGAACTTCAACATCTACAGAAGGATCTTCACTGACATGGTGAGCTCCCCTGGGACCAACAGCGCCGAGGCCTATCACAACTGGGCTGACCTTCGGGACGTCCTCTTCAACCTGTGTGAAAACTTGGTGAAGTCCAGTGAGGCAAACTCTCCAGCCCATGAGGAGTTCGAGACCATGCTGCTGATCGCCCATTACTATGCCACTCGCTCTGCGGCCCAGAGCATCAAACAGCTGGAAACTGTGGCTGCCAGGCTTTCTGTTTCACTCTTACGTCACACCCAGCTACTACCTGCAGACAAGGCCTTCTATGAAGCAGGCATTGCTGCCAAGGCAGTTGGCTGGGAGAACATGGCCTTCATCTTCCTCAACCGCTTTTTGGATCTGACAGATGCAATCGAAGAAGGGACTCTGGATGCCCTTGACCACTCTGACTTTCAGGATACAGACATTCCCTTTGAGGTGCCACTCCCAGCCAAGCAGCACATCCCGGAGGCTCAGAGAGAAGAAGTTCGAGACTGGGTGCTCACAATCTCAATGGACCAGCGGTTGGAGCAGGTTCTGCCTCAGGATGAGCGCGGTGCCTACGAGGCTTCCCTGGTGGCGGCCAGCACTGGAGTTCGGGCACTGCCCTGCCTCATTACAGGATATCCCATTCTGAGGAACAAAATTGAATTTAAGCGGCCAGGGAAGGCAGCTAACAAGGACAACTGGAATAAGTTCCTTATGGCCATCAAGACCTCCCACAGCCCTGTGTGCCAAGACGTGCTGAAGTTCATCAGTCAATGGTGCGGGGGACTGCCCAGCACCAGCTTCTCCTTTCAGTAG

Related Sequences

bmy_01090T0 Protein

Length: 1766 aa      View alignments
>bmy_01090T0
MQLKHLRTLLSPQDGAAKVTCMAWSQNNAKFAVCAVDRVVLLYDEHGERRDKFSTKPADMKYGRKSYMVKGMAFSPDSTKIAIGQTDNIIYVYKIGEDWGDKKVICNKFIQTSAVTCLQWPAEYIIVFGLAEGKVRLANTKTNKSSTIYGTDSYVVSLTTNCSGKGILSGHADGTIVRYFFDDEGSGESQGKLVNHPCPPYALAWATNSIVAAGCDRRIVAYGKEGHVLQTFDYSRDPQEREFTTAAASPGGQSVVLGSYDRLRVLNWSPRRSIWEEAKPKEIANLYTITALAWKRDGSRLCAGTLCGGVEQFDCCLRRSIYKNKFELTYVGPSQVIVKNLSSGTRVVLKSHYGYEVEEVKILGKERYLVAHTSDTLLLGDLNTNRLSEVGTKNGEVAWQGSGGNEKYFFENENVCMIFNAGELTLVEYGSNDTLGSVRTEFMNPHLISVRINERXQRGMEDNKKLAYLVDIKTIAVVDLIGGYNIGTISHESRVDWLELNETGHKLLFRDRKLRLHLYDIESCSKTMILSFCSYVQWVPGSDVLVAQNRNNLCVWYNIEAPERVTMSSIRGDVVGLERGGGKTEVMVTEGVTTVAYTLDEGLIEFGTAIDDGNYTRAAAFLETLEMTPETEAMWKTLSKLSLEARQLHIAERCFSALGHVAKARFLHETNEIADQVSREYASILLLIRSGGEGTDFYQVRARLAMLEKNYKLAEMIFLEQNAVEEAMDMYQELHRWDECIAVAEAKGHPALEKLRRGYYQWLMDTQQEERAGELQESQGDGLAAISLYLKAGLPAKAARLVLTREELLATTELVEHITAALIKSELYERAGDLFEKIRNPQRALECYRKGNAFMKAVELARLAFPVEVVRLEEAWGDHLVQQKQLDAAINHYIEARCSIKAIEAALGARQWKKAIYILDLQDQNTASKYYPRVAQHYASLQEYEIAEELYTKGDRTKDAIDMYTQAGRWEQAHKLAMKCMRPEDVSVLYITQAQEMEKQGKYREAERLYVTVEEPDLAITMFKKHKLYDDMIRLVGKHHPDLLSDTHLHLGKELEAEGRLQEAEYHYLEAQEWKATVNMYRSSGLWEEAYRVAKAHGGANAHKHVAYLWAKSLGGEAAVRLLNKLGLLEAAIDHAADNCSFEFAFELSRLALKHKTPEIHLRYAMFLEDEGKFEEAEAEFIRAGKPKEAVLMFVHNQDWEAAQRVAEAHDPDSVTEVLMGQARGALEEKDFQKAEGLLLRAQRPGLALSYYKEAGLWSDALRICKDYMPSQLEALQEEYEREATKKGARGMEGLVEQARQWEQAGEYSRAVDCYLKVRDAGSSSLVEKCWMKAAELSIKFLPPQRSLEVVRAVGPQLIGIGKHSAAAELYLNLDLVKEAIDAFLEGEEWNKAKRVAKELDPRYEDYVDQHYKEFLKNQGKVDSLVGVDVAAALDLYVEQGQWDKCVETATKQNYKILHKYVALYATHLIREGGYAQALALYVQHGAPANPQNFNIYRRIFTDMVSSPGTNSAEAYHNWADLRDVLFNLCENLVKSSEANSPAHEEFETMLLIAHYYATRSAAQSIKQLETVAARLSVSLLRHTQLLPADKAFYEAGIAAKAVGWENMAFIFLNRFLDLTDAIEEGTLDALDHSDFQDTDIPFEVPLPAKQHIPEAQREEVRDWVLTISMDQRLEQVLPQDERGAYEASLVAASTGVRALPCLITGYPILRNKIEFKRPGKAANKDNWNKFLMAIKTSHSPVCQDVLKFISQWCGGLPSTSFSFQ*