Part of scaffold_22 (Scaffold)

For more information consult the page for scaffold_22 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

POLR2F ENSTTRG00000004817 (Bottlenosed dolphin)

Gene Details

polymerase (RNA) II (DNA directed) polypeptide F

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000004540, Bottlenosed dolphin)

Protein Percentage 81.89%
cDNA percentage 85.04%
Ka/Ks Ratio 0.48633 (Ka = 0.1488, Ks = 0.3061)

BT.91103 ENSBTAG00000004820 (Cow)

Gene Details

DNA-directed RNA polymerases I, II, and III subunit RPABC2

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000006328, Cow)

Protein Percentage 100.0%
cDNA percentage 95.28%
Ka/Ks Ratio 0.001 (Ka = 0.0003, Ks = 0.2912)

POLR2F  (Minke Whale)

Gene Details

polymerase (RNA) II (DNA directed) polypeptide F

External Links

Gene match (Identifier: BACU013353, Minke Whale)

Protein Percentage 98.98%
cDNA percentage 99.66%
Ka/Ks Ratio 99.0 (Ka = 0.0041, Ks = 0.0)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 495 bp    Location:554549..543069   Strand:-
>bmy_01132
TCACGGCGCAGGCGCAGAGTACGCGTGGCGTCGAGCGAGGCAGAGGCGCGTTGTTTGCGGGTCTCCGCTCGGGTCTGGGGCGCAGAACCCGGTAGCTGCGGCGCGGGTGTCATGTCAGACAACGAGGACAATTTTGATGGCGACGACTTTGATGACGTGGAGGAGGATGAAGGGCTAGATGACTTGGAGAATGCCGAGGAGGAGGGCCAGGAGAACGTTGAGATCCTCCCTTCTGGAGAGCGACCGCAGGCCAACCAGAAGCGAATCACCACACCATATATGACCAAGTATGAGCGAGCCCGTGTGCTGGGCACCCGAGCCCTTCAGATCGCGATGTGTGCCCCCGTGATGGTGGAGCTGGAGGGGGAGACAGATCCCTTGCTCATCGCCATGAAAGAGCTCAAGGCCCGAAAGATTCCCATCATCATTCGCCGTTACCTGCCTGACGGGAGCTATGAAGACTGGGGGGTAGACGAGCTTATCATCACCGACTGA

Related Sequences

bmy_01132T0 Protein

Length: 165 aa      View alignments
>bmy_01132T0
SRRRRRVRVASSEAEARCLRVSARVWGAEPGSCGAGVMSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKYERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGVDELIITD*