Part of scaffold_25 (Scaffold)

For more information consult the page for scaffold_25 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

AP1S2 ENSTTRG00000012449 (Bottlenosed dolphin)

Gene Details

adaptor-related protein complex 1, sigma 2 subunit

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011804, Bottlenosed dolphin)

Protein Percentage 64.52%
cDNA percentage 64.52%
Ka/Ks Ratio 0.61039 (Ka = 0.0806, Ks = 0.1321)

AP1S2 ENSBTAG00000020420 (Cow)

Gene Details

AP-1 complex subunit sigma-2

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000027212, Cow)

Protein Percentage 92.26%
cDNA percentage 92.9%
Ka/Ks Ratio 0.31698 (Ka = 0.0521, Ks = 0.1645)

AP1S2  (Minke Whale)

Gene Details

adaptor-related protein complex 1, sigma 2 subunit

External Links

Gene match (Identifier: BACU020076, Minke Whale)

Protein Percentage 57.25%
cDNA percentage 76.84%
Ka/Ks Ratio 0.99506 (Ka = 0.2981, Ks = 0.2996)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 597 bp    Location:2209886..2229998   Strand:+
>bmy_01267
ACTCCGCGAACCGGGTCCTCTCCCCACAGCAACACGGCTTCTCTTCCTCAGCTCAGCGACAGGGGCTTCCCCTTAGCCGCCGCCGCCGCCGCCGGCCGAGCCCCGCCGCGCCTGCGGCCCGCGGCCGCCATGCAGTTTATGTTGCTTTTTAGTCGTCAGGGAAAGCTTCGACTGCAGAAATGGTACGTCCCATTATCAGACAAAGAGAAGAAAAAGATCACAAGAGAACTTGTTCAAACCGTTTTAGCACGGAAACCTAAAATGTGCAGCTTTCTTGAGTGGCGAGATCTGAAGATTGTTTACAAAAGATATGCCAGTCTGTATTTTTGCTGTGCTATTGAGGATCAGGACAATGAACTAATTACCCTGGAAATAATTCATCGTTACGTGGAATTACTTGACAAGTATTTTGGCAGTGTGTGTGAACTTGATATCATCTTTAATTTTGAGAAGGCCTATTTTATTTTGGATGAGTTTCTTTTGGGAGGAGAAGTTCAGGAAACATCCAAGAAAAATGTCCTTAAAGCAATTGAGCAGGCTGATCTACTGCAGGAGAAAACAGAACATGTATCACAGCAAGAGTTTCGTTGGGTGTAA

Related Sequences

bmy_01267T0 Protein

Length: 199 aa      View alignments
>bmy_01267T0
TPRTGSSPHSNTASLPQLSDRGFPLAAAAAAGRAPPRLRPAAAMQFMLLFSRQGKLRLQKWYVPLSDKEKKKITRELVQTVLARKPKMCSFLEWRDLKIVYKRYASLYFCCAIEDQDNELITLEIIHRYVELLDKYFGSVCELDIIFNFEKAYFILDEFLLGGEVQETSKKNVLKAIEQADLLQEKTEHVSQQEFRWV*