Sequence detailsbmy_01306 (Coding sequence)

Part of scaffold_28 (SequenceType object (1))

For more information consult the page for scaffold_28 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LSM4ENSTTRG00000006491 (Bottlenosed dolphin)

Gene Details

LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000006136, Bottlenosed dolphin)

Protein Percentage 85.54%
cDNA percentage 89.56%
Ka/Ks Ratio 0.1692 (Ka = 0.0667, Ks = 0.3944)

LSM4ENSBTAG00000008578 (Cow)

Gene Details

U6 snRNA-associated Sm-like protein LSm4

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000011312, Cow)

Protein Percentage 87.02%
cDNA percentage 90.08%
Ka/Ks Ratio 0.13744 (Ka = 0.0572, Ks = 0.4161)

LSM4 (Minke Whale)

Gene Details

LSM4 homolog, U6 small nuclear RNA associated (S. cerevisiae)

External Links

Gene match (Identifier: BACU016662, Minke Whale)

Protein Percentage 79.39%
cDNA percentage 85.5%
Ka/Ks Ratio 0.26058 (Ka = 0.1182, Ks = 0.4536)

Additional orthologs identified in other species via the OPTIC pipeline.

LSM4 (Human)   Lsm4 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 396 bp    Location:853165..853560   Strand:+
Raw sequence 
>bmy_01306
ATGCTTCACTTGTGGCTGCTGAAAACGGCTCAGAATCACCCACTGTTGGTGGAGCTCAAAAACGGGGAGACGTACAATGGGCATCTGGTGAGCTGCGACAACTGGATGAACATCAACTTGCGTGAGGTGATCAGCAAGTCCAGGGACAGGGACAAATTCTGGCTGATGCCCGAGTGCTACATCCGCGGCAGCACCATCAAGTACCTGCGCATCCCCGATGAGATCACCGACACGGTCAAGGAGGAGGTGGTGGCCAAGGGCCGTGGCCGTGGGGGCCTGCAGCGGCAGAAGCAACAGAAGGGCCATGGCACGGGGGGTGCCGGGCGAGGAGGGATCCCAGGGACCAGCAGAGATCAGCCAGAAAGGAGGCCGGGCAGAGAGGCGGGCAAACAGTGA

Related Sequences

bmy_01306T0 SequenceType object (3)

Length: 132 aa      View alignments
>bmy_01306T0
MLHLWLLKTAQNHPLLVELKNGETYNGHLVSCDNWMNINLREVISKSRDRDKFWLMPECYIRGSTIKYLRIPDEITDTVKEEVVAKGRGRGGLQRQKQQKGHGTGGAGRGGIPGTSRDQPERRPGREAGKQ*