Part of scaffold_35 (Scaffold)

For more information consult the page for scaffold_35 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CLIP1 ENSTTRG00000015803 (Bottlenosed dolphin)

Gene Details

CAP-GLY domain containing linker protein 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000014978, Bottlenosed dolphin)

Protein Percentage 91.16%
cDNA percentage 92.62%
Ka/Ks Ratio 0.49117 (Ka = 0.0461, Ks = 0.0938)

CLIP1 ENSBTAG00000016779 (Cow)

Gene Details

CAP-Gly domain-containing linker protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000022319, Cow)

Protein Percentage 88.96%
cDNA percentage 89.02%
Ka/Ks Ratio 0.22572 (Ka = 0.0687, Ks = 0.3045)

CLIP1  (Minke Whale)

Gene Details

CAP-GLY domain containing linker protein 1

External Links

Gene match (Identifier: BACU013639, Minke Whale)

Protein Percentage 94.77%
cDNA percentage 95.78%
Ka/Ks Ratio 0.51423 (Ka = 0.0363, Ks = 0.0705)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 3993 bp    Location:1276817..1220291   Strand:-
>bmy_01454
ATGATGACAGTCATTGACCTGAAATTGACCATCATCATCAAGGGAGCAGTTGCAGCTCCAATAGAAAAAACAATATCCAGTGAAAAAGCATCAAGCACTCCGTCTCCTGACACACAAGAGGAGTTTGTGGATGATTTTCGAGTTGGGGAGCGAGTTTGGGTGAATGGGAATAAGCCTGGATTTATCCAGTTCCTGGGAGAAACCCAGTTTGCACCAGGCCAATGGGCCGGGATCGTTTTAGATGAACCCATAGGCAAGAACGATGGTTCAGTGGCAGGAATTCGGTATTTCCAGTGTGAACCTTTAAAGGGCATATTCACCCGACCTTCAAAGTTGATGAGGAAGGTGCAGGCAGAAGATGAAGCCGATGGCCTGCAGACAACTCATGCTTCCAGAACGACTTCGCCTCTGTCCACTTCGACAGCCAGCATGGTGTCCTCTTCCCCAGCCACCCCCTCAAATATTCCCCATAAATTGCCCCAGCCAACCGCAAAGGAACCTTCAGCTACGTCTCAGATCAGCAACCTTACAAAAACCACCAGTGAATCTATTTCCAACCTTTCGGAGGCCGGCTCAATCAAGAAAGAAAGAGAGCTCAAAATTGGAGACCGAGTATTGGATAGTGTGTGGATGTATGTTCTATTACCTGCATTTAGAGAAAAAGTTGCTGATCTGTTTGTGGTAATTTGTTATAAAGCTTCTGATCTGAGTGAAGCCATGGCGATTTCATTATTGGACTATCTCAGGTATCGGATCACTCTGGCGACAGAAGCCACCCAGGTGAACTTTGCTAACCTTTGGAGAGAACTCTTTGAAGAGTTGGAGAGGAGGTTAAGAGAAGACCTGCTTATAGAAATGATGGAACACAGTACTGGCTGCAACTGCAAAGGATTAAGCTGTGAAACTGTTGGTGGCACGAAGGCTGGTGTCGTCCGGTTTCTTGGGGAGACAGACTTCGCCAAGGGGGAGTGGTGTGGTGTGGAGTTGGATGAGCCTCTTGGGAAGAACGATGGGGCTGTCGCTGGAACAAGGTATTTTCAATGTCAACCCAAATATGGCCTGTTCGCTCCTGTCCACAAAGTGACCAGGATTGGCTTCCCTTCCACCACACCAGCCAAAGCCAAGGCCGCTGCAGTGAGGCGGGTGATGGCGACCACACCCGCCAGCCTGACGCGCAGCCCTTCTGCCTCTTCTCTCAGCTCCATGAGCTCTGTGGCCTCCTCTGTGGGCAGCAAGCCCAGTCGGACAGGATTGTTGACCGAAACCTCCTCCCGTTACGCCAGGAAGATCTCCGGCACCACTGCCCTCCAGGAGGCCCTGAAGGAGAAACAGCAGCACATTGAACAGCTGCTGGCTGAACGGGATCTAGAGAGGGCGGAGGTGGCCAAGGCCACGAGCCACGTGGGGGAGATAGAGCAGGAGCTAGCTCTGGCCCGGGACGGACACGACCAGCATGTCCTGGAATTGGAGGCCAAGATGGACCAGCTGCGAGCAATGGTGGAAGCTGCTGACAGGGAGAAGGTGGAGCTTCTCAACCAACTTGAAGAGGAGAGAAGGAAGGTTGAGGACCTTCAGTTCCGGGTTGAAGAAGAATCAATTACTAAGGGCGACCTTGAGCAAAAGAGCCAGATTTCTGAAGATCCTGAGAATACGCAGACCAAACTGGAGCACGCCCGCATTAAGGAGCTTGAACAGAGCCTGCTCTATGAAAAGACCAAAGCTGGCAAACTCCAGAGGGAGTTAGAAGACACTAGGGTGGCCACAGTGTCAGAAAAGTCCCGCATAATGGAACTAGAAAAAGACCTAGCGTTCAGAGTACAGGAAGTAGCTGAGCTGCGAAGGAGGCTGGAGTCCAGTAAGCCTGCTGGGGATGTTGACATGTCACTCTCCCTTTTACAAGAGATAAGCGCTTTGCAAGAAAAGTTAGAAGCCACCCATACTGACCATCAGAAAGAAATCACTTCTCTGAAGGAGCATTTTGGAGCCCGGGAAGAAACCCATCAGAAGGAGATAAAGGCTCTTCAGGCCACCACAGAGAAGCTTTCCAAAGAGAACGAGTCACTGAAAAGCAAGCTTGATCACGCCAACAAGGAGAATTCGGACGTGATAGCTCTGTGGAAGTCCAGGCTGGAGACCGCCATCGCATCCCACCAGCAGGCGATGGAGGAGCTGAAGGTGTCCTTCAGCAAGGGGGTCGGCACGGAGACGGCAGAATTTGCCGAGTTAAAAACGCAAATAGAGAAAATGAGACTAGATTACCAGCACGAAATAGAAAATTTGCAGAATAAACAAGACTTGGAAAGGTCTGCTCACACTAAAGAGCTTGAAGCCCTGAGGGCTAAACTGATGAAAGTCATGAAAGAGAAAGAGAACAGTCTGGAAGCCATCAAGTCGAAGCTGGACAAAGCGGAAGACCAGCATCTAGTAGAAATGGAGGACACCTTAAACAAATTGCAGGAAGCTGAGCTAAAGGTAAAGGAGCTAGAGGTACTACAAGCCAAATGCAATGAACAAACCAAGGTTATTGATAATTTTACATCACAGCTCAAGGCTGCCGAAGACAAGCTCTTGGATCTTGATGCTCTTCGGAAAGCCAGTTCCGAAGGTAAATCGGAAATCGAGAACCTTAGACAGCAGCTTGAGGCAGCTGAGAAACAGATTAAAAATTTAGAGATCGAAAAGAATGCTGAAAGTGGCAAGGCTAGTAGCATCACCAAAGAGCTGCAGGGAAAAGAGCTAATGCTTAATAAACTTCAGGAAAACTTGAGTGAAGTCAGTCAAGTGAAAGAGGCTTTGGAAAAAGAACTTCAGATTTTGAAAGAAAATTTTGCTGATGCTTCAGAGCAGGCAGTCTCTGTTCAGAGAAGTATGCAAGAAACTGTAAATAAATTACACCAAAAAGAGGAACAGTTTAATGTGCTGTCTTCTGAATTGGAGAAGTTGAGAGAAAATTTAACAGAGAGAGAGGAAAGGGAAGAACAGTTGATAAAGGCGAAGGAAAAACTGGAAAACGACATTGCAGTAATAATGAAAATGTCAGGAGATAGTTCTTCTCAGCTGACAAAAATGAATGATGAATTACGTCTGAAAGAAAGAAATGTAGAAGAATTACAGCTAAAACTTACCAAGGCTAATGAAAATGCAAGTCTTCTGCAGAAAAGTATTGGGGAAGTAACTCTCAAAGCTGAACAGAGCCAGCAAGAAGCAGCTAAAAAGCATGAGGAAGAAAAGAAAGAACTGCTGAAAAAATTGTCAGACCTGGAAAAGAAAATGCAAATGAGCCACAACGAGTGTCAAGAGCTGGAAGCCAGGTATGAAGAAGCCAGTTCTGAGACACAGGCCAAGCATGAAGAAGTGCTGCAGAACCTCCAGAAGATGCTGTTGGACACAGGGGAGCGGCTGAAGGCTGCACAAAAGGAGAACAGTGACTTGCTGCAGGAGATGGAGGAGCTGAGAAGGCAAACCGACAAAGCCAGAGCTGCTCAAACAACAGAAGATGCCATGCAGATAATGGAACAGATGACCAAAGAGAAGACAGAAACTCTGGCCTCCTTGGAGGATTCCAAGCAAACAAATGAAAAACTGCAGAACGAATTGGATACACTTAAAGAAAACAACTTGAAAAATATGGAAGAGCTGAACAAATCAAAAGAACTTCTGACTGTAGAGAACCAAAAAATGGAAGAATTCAAGAAAGAAATAGAAACCCTAAAGCAGGCAGCAGCTCAGAAGTCCCAGCAGCTTTCAGCACTGCAAGAGGAGAACGTGAAACTTGCCGAGGAGCTGGGGAGAAGCAGGGACGAAGTCACAAGTCATCAAAAGGTCAGTGGGCGTTGGGTGGGCATTCCCAGCTCGGCCACGCTGATGTCTGCTGCTGTGGGCAGGGCGCTCGGAGGCTCCTCAGAGAACGTGCTCGATGTGGTGGGGTGGTTCAAATGGGATTTCAAGTCACCTGTGTTACATGTCTCCTCGTTTTCAAGCGTGCTGCTGTAG

Related Sequences

bmy_01454T0 Protein

Length: 1331 aa      View alignments
>bmy_01454T0
MMTVIDLKLTIIIKGAVAAPIEKTISSEKASSTPSPDTQEEFVDDFRVGERVWVNGNKPGFIQFLGETQFAPGQWAGIVLDEPIGKNDGSVAGIRYFQCEPLKGIFTRPSKLMRKVQAEDEADGLQTTHASRTTSPLSTSTASMVSSSPATPSNIPHKLPQPTAKEPSATSQISNLTKTTSESISNLSEAGSIKKERELKIGDRVLDSVWMYVLLPAFREKVADLFVVICYKASDLSEAMAISLLDYLRYRITLATEATQVNFANLWRELFEELERRLREDLLIEMMEHSTGCNCKGLSCETVGGTKAGVVRFLGETDFAKGEWCGVELDEPLGKNDGAVAGTRYFQCQPKYGLFAPVHKVTRIGFPSTTPAKAKAAAVRRVMATTPASLTRSPSASSLSSMSSVASSVGSKPSRTGLLTETSSRYARKISGTTALQEALKEKQQHIEQLLAERDLERAEVAKATSHVGEIEQELALARDGHDQHVLELEAKMDQLRAMVEAADREKVELLNQLEEERRKVEDLQFRVEEESITKGDLEQKSQISEDPENTQTKLEHARIKELEQSLLYEKTKAGKLQRELEDTRVATVSEKSRIMELEKDLAFRVQEVAELRRRLESSKPAGDVDMSLSLLQEISALQEKLEATHTDHQKEITSLKEHFGAREETHQKEIKALQATTEKLSKENESLKSKLDHANKENSDVIALWKSRLETAIASHQQAMEELKVSFSKGVGTETAEFAELKTQIEKMRLDYQHEIENLQNKQDLERSAHTKELEALRAKLMKVMKEKENSLEAIKSKLDKAEDQHLVEMEDTLNKLQEAELKVKELEVLQAKCNEQTKVIDNFTSQLKAAEDKLLDLDALRKASSEGKSEIENLRQQLEAAEKQIKNLEIEKNAESGKASSITKELQGKELMLNKLQENLSEVSQVKEALEKELQILKENFADASEQAVSVQRSMQETVNKLHQKEEQFNVLSSELEKLRENLTEREEREEQLIKAKEKLENDIAVIMKMSGDSSSQLTKMNDELRLKERNVEELQLKLTKANENASLLQKSIGEVTLKAEQSQQEAAKKHEEEKKELLKKLSDLEKKMQMSHNECQELEARYEEASSETQAKHEEVLQNLQKMLLDTGERLKAAQKENSDLLQEMEELRRQTDKARAAQTTEDAMQIMEQMTKEKTETLASLEDSKQTNEKLQNELDTLKENNLKNMEELNKSKELLTVENQKMEEFKKEIETLKQAAAQKSQQLSALQEENVKLAEELGRSRDEVTSHQKVSGRWVGIPSSATLMSAAVGRALGGSSENVLDVVGWFKWDFKSPVLHVSSFSSVLL*