Part of scaffold_39 (Scaffold)

For more information consult the page for scaffold_39 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

VPS54 ENSTTRG00000000696 (Bottlenosed dolphin)

Gene Details

vacuolar protein sorting 54 homolog (S. cerevisiae)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000000655, Bottlenosed dolphin)

Protein Percentage 96.18%
cDNA percentage 96.89%
Ka/Ks Ratio 0.45914 (Ka = 0.0149, Ks = 0.0325)

VPS54 ENSBTAG00000000115 (Cow)

Gene Details

vacuolar protein sorting-associated protein 54

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000000123, Cow)

Protein Percentage 96.32%
cDNA percentage 96.25%
Ka/Ks Ratio 0.18223 (Ka = 0.0193, Ks = 0.1061)

VPS54  (Minke Whale)

Gene Details

vacuolar protein sorting 54 homolog (S. cerevisiae)

External Links

Gene match (Identifier: BACU013720, Minke Whale)

Protein Percentage 97.93%
cDNA percentage 98.55%
Ka/Ks Ratio 0.63775 (Ka = 0.0126, Ks = 0.0198)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2985 bp    Location:1287412..1207261   Strand:-
>bmy_01559
ATGGCTTCAAGCCACAGTTCTTCACCAGTGCCTCAAGGAAGCAGCAGTGATGTTTTCTTTAAAAAAGAGGTAGACCCGGCAAAACACATTCGACCTGTGCAGTCACTGCCAGATGTGTGTCCCAAGGAGCCCACAGGTGATTCAAATAGTTTATGTGTTGCCCCATCTCTAGTTACAGATCAACATAGATGGACTATATATCATTCCAAAGTAAATCTCCCAGCAGCATTAAATGATCCTAGATTAGCAAAAAGAGAATCTGACTTCTTCACAAAAACATGGGGATTGGACTTTGTGGACACTGAAGTCATACCTTCATTCTACCTCCCACAGATCAGCAAGGAACATTTTACAGTATATCAACAGGAAATCTCTCAGAGAGAGAAGATTCATGAGAGATGCAAGAAAATTTGTCCTCCTAAAGATACCTTTGACAGGACTCTCTTACATACTCATGATAAATCCAGGACAGATCTGGAGCAAGTACCTAAGATTTTTATGAAACCAGATTTTGCCTTGGACGATTCCTTAACTTTTAATTCAGTTTTACCATGGTCTCATTTTAATACTGCTGGTGGAAAAGGAAATCGTGATGCAGCTTCCTCAAAGTTGCTACAAGAAAAGCTGAGCCATTATCTGGATATTGTGGAAGTAAACATTGCTCACCAGATCTCTCTACGTTCAGAAGCATTTTTTCATGCAATGACCTCTCAACACGAATTGCAGGACTACCTCAAGAAAACTTCCCAGGCTGTAAAAATGCTTCGAGATAAAATTGCACAGATTGATAAAGTAATGTGTGAAGGATCACTACACATTTTAAGACTGGCACTTACCAGAAATAATTGTGTTAAAGTATACAATAAACTGAAATTAATGGCCACTGTACACCAGACTCAGCCTACAGTACAGGTGTTGTTATCTACTTCTGAATTTGTCGGAGCATTGGACTTAATAGCAACAACACAAGAGGTTCTACAGCAGGAACTTCAGGGCATTCACAGCTTCCGGCATTTGGGATCACAGCTTTGTGAATTAGAAAAACTGATAGATAAAATGATGATTGCAGAATTTTCTACTTATTCTCACAGTGACTTAAATAGACCATTGGAAGATGACTGTCAAATTTTAGAAGAGGAAAGACTAGTATCTCTTGTATTTGGACTTTTAAAACAAAGAAAACTTAACTTTTTAGAAATATATAGTGAAGAAATGATTATTACAGCAAAGAATATCATTAAACAGGGTAAAGGGAATTTTCTCAACTTAGAGAACATCCTATATCGCAAGTRTATAGGAGTATCTTTTGAGAATAAAGTCCTAGGTGTAGCAGCGTTAATTAAAAATTTGGAGCTTGCAGATCAGATGAGAATGTTGAATTTTCTTCAGTGGTTTGATCTGCTAAAGGATATTTTCTCTAAGTTTACAATTTTCCTACAGAGAGTTAAGGCAACGTTAAATATCATTCACAGTGTTGTTCTCTCAGTTCTTGACAAAAATCAAAGGACTAGAGAATTGGAGGAGATTTCGCAGCAGAAGAATGCTGCAAAAGACAATTCACTGGACACGGAGGTGGCTTATTTAATCCATGAAGGCATGTTTATAAGCGATGCATTCAGTGAGAGTGAATTAACACCTATAACAATTGACACTACCTCTCAAAGAAATGCATCTCCAAATAGTGAGCCCTGCAGCAGTGATTCGGTATCCGAACCAGAATGTGCTACTGATTCTTCATCCAGCAAAGAGCAGACATCATCATCTGTTACTCCAGGAGCTGTGGATATTATGGTCAATGAAGACATGAAATTAACTGACTTAGAGCTGGGAAAGCTGGCAAATAATGTCCAGGAGTTATTATATAGTGCCTCAGATATATGCCATGATCGAGCCGTCAAATTTCTCATGTCAAGAGCAAAGGATGGTTTTCTTGAGAAACTAAATTCCACAGAATTCATAACACTTTCCAGATTAATGGAAACATTCATTTTAGAAACTGAACAGATCTGTGGAAGAAAAAGCATGTCATTACTTGGAGCACTTCAGAGCCAAGCTAATAAATTTGTAAACAGGTTTCATGAAGAGAGAAAAACCAAGCTCAGCCTCCTCTTAGACAATGAGCGCTGGAAGCAAGCTGATGTTCCCGCAGAATTTCAGGATCTTGTTGATTCTATAGCAGATGGAAAGATTGCTTTACCTGAAAAAAAATCAGGGGCTGCAGAAGAAAGGAAACCAGCTGAAGTTCTCATTGTCGAGGGACAACAGTATGCTGTTGTTGGAACCGTATTGCTGTTGATAAGAATTATCCTTGAATATTGCCAGTGTGTGGATAATATCCCATCTGTTACTACTGACATGCTCACTCGTCTATCAGATTTATTGAAGTACTTCAATTCAAGAAGTTGCCAGTTAGTTCTTGGAGCTGGTGCACTGCAAGTTGTTGGACTAAAAACAATAACTACAAAAAATTTGGCTCTTTCTTCACGCTGTTTGCAGTTAATCGTGCACTACATTCCTGTGATCAGGGCTCATTTTGAAGCTCGACTGCAGCCTAAGCAGTATAGTATGCTTAGGCATTTTGATCATATCACTAAGGACTACCATGACCACATAGCTGAAATATCAGCTAAGCTTGTAGCGATAATGGATAGCTTATTTGACAAGCTGTTATCTAAGTATGAAGTGAAAGCTCCCGTTCCTTCTGCCTGTTTCAGGAATATTTGTAAGCAAATGGCAAAAATGCATGAAGCTATATTTGATCTCCTTCCAGAAGAACAAACACAAATGTTATTTTTAAGAATTAATGCAAGTTACAAACTCCACTTGAAAAAGCAATTATCTCACTTAAATGTGATAAATGATGGAGGACCTCAAAATGGGTTGGTCACAGCAGATGTAGCTTTTTACACTGGAAATCTTCAAGCCTTAAAAGGCCTTAAAGATTTGGACCTAAATATGGCCGAGATCTGGGAACAGAAAAGGTGA

Related Sequences

bmy_01559T0 Protein

Length: 995 aa      View alignments
>bmy_01559T0
MASSHSSSPVPQGSSSDVFFKKEVDPAKHIRPVQSLPDVCPKEPTGDSNSLCVAPSLVTDQHRWTIYHSKVNLPAALNDPRLAKRESDFFTKTWGLDFVDTEVIPSFYLPQISKEHFTVYQQEISQREKIHERCKKICPPKDTFDRTLLHTHDKSRTDLEQVPKIFMKPDFALDDSLTFNSVLPWSHFNTAGGKGNRDAASSKLLQEKLSHYLDIVEVNIAHQISLRSEAFFHAMTSQHELQDYLKKTSQAVKMLRDKIAQIDKVMCEGSLHILRLALTRNNCVKVYNKLKLMATVHQTQPTVQVLLSTSEFVGALDLIATTQEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAEFSTYSHSDLNRPLEDDCQILEEERLVSLVFGLLKQRKLNFLEIYSEEMIITAKNIIKQGKGNFLNLENILYRKXIGVSFENKVLGVAALIKNLELADQMRMLNFLQWFDLLKDIFSKFTIFLQRVKATLNIIHSVVLSVLDKNQRTRELEEISQQKNAAKDNSLDTEVAYLIHEGMFISDAFSESELTPITIDTTSQRNASPNSEPCSSDSVSEPECATDSSSSKEQTSSSVTPGAVDIMVNEDMKLTDLELGKLANNVQELLYSASDICHDRAVKFLMSRAKDGFLEKLNSTEFITLSRLMETFILETEQICGRKSMSLLGALQSQANKFVNRFHEERKTKLSLLLDNERWKQADVPAEFQDLVDSIADGKIALPEKKSGAAEERKPAEVLIVEGQQYAVVGTVLLLIRIILEYCQCVDNIPSVTTDMLTRLSDLLKYFNSRSCQLVLGAGALQVVGLKTITTKNLALSSRCLQLIVHYIPVIRAHFEARLQPKQYSMLRHFDHITKDYHDHIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSACFRNICKQMAKMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKDLDLNMAEIWEQKR*