Sequence detailsbmy_01559 (Coding sequence)

Part of scaffold_39 (SequenceType object (1))

For more information consult the page for scaffold_39 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

VPS54ENSTTRG00000000696 (Bottlenosed dolphin)

Gene Details

vacuolar protein sorting 54 homolog (S. cerevisiae)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000000655, Bottlenosed dolphin)

Protein Percentage 96.18%
cDNA percentage 96.89%
Ka/Ks Ratio 0.45914 (Ka = 0.0149, Ks = 0.0325)

VPS54ENSBTAG00000000115 (Cow)

Gene Details

vacuolar protein sorting-associated protein 54

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000000123, Cow)

Protein Percentage 96.32%
cDNA percentage 96.25%
Ka/Ks Ratio 0.18223 (Ka = 0.0193, Ks = 0.1061)

VPS54 (Minke Whale)

Gene Details

vacuolar protein sorting 54 homolog (S. cerevisiae)

External Links

Gene match (Identifier: BACU013720, Minke Whale)

Protein Percentage 97.93%
cDNA percentage 98.55%
Ka/Ks Ratio 0.63775 (Ka = 0.0126, Ks = 0.0198)

Additional orthologs identified in other species via the OPTIC pipeline.

VPS54 (Human)   Vps54 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2985 bp    Location:1287412..1207261   Strand:-
Raw sequence 
>bmy_01559
ATGGCTTCAAGCCACAGTTCTTCACCAGTGCCTCAAGGAAGCAGCAGTGATGTTTTCTTTAAAAAAGAGGTAGACCCGGCAAAACACATTCGACCTGTGCAGTCACTGCCAGATGTGTGTCCCAAGGAGCCCACAGGTGATTCAAATAGTTTATGTGTTGCCCCATCTCTAGTTACAGATCAACATAGATGGACTATATATCATTCCAAAGTAAATCTCCCAGCAGCATTAAATGATCCTAGATTAGCAAAAAGAGAATCTGACTTCTTCACAAAAACATGGGGATTGGACTTTGTGGACACTGAAGTCATACCTTCATTCTACCTCCCACAGATCAGCAAGGAACATTTTACAGTATATCAACAGGAAATCTCTCAGAGAGAGAAGATTCATGAGAGATGCAAGAAAATTTGTCCTCCTAAAGATACCTTTGACAGGACTCTCTTACATACTCATGATAAATCCAGGACAGATCTGGAGCAAGTACCTAAGATTTTTATGAAACCAGATTTTGCCTTGGACGATTCCTTAACTTTTAATTCAGTTTTACCATGGTCTCATTTTAATACTGCTGGTGGAAAAGGAAATCGTGATGCAGCTTCCTCAAAGTTGCTACAAGAAAAGCTGAGCCATTATCTGGATATTGTGGAAGTAAACATTGCTCACCAGATCTCTCTACGTTCAGAAGCATTTTTTCATGCAATGACCTCTCAACACGAATTGCAGGACTACCTCAAGAAAACTTCCCAGGCTGTAAAAATGCTTCGAGATAAAATTGCACAGATTGATAAAGTAATGTGTGAAGGATCACTACACATTTTAAGACTGGCACTTACCAGAAATAATTGTGTTAAAGTATACAATAAACTGAAATTAATGGCCACTGTACACCAGACTCAGCCTACAGTACAGGTGTTGTTATCTACTTCTGAATTTGTCGGAGCATTGGACTTAATAGCAACAACACAAGAGGTTCTACAGCAGGAACTTCAGGGCATTCACAGCTTCCGGCATTTGGGATCACAGCTTTGTGAATTAGAAAAACTGATAGATAAAATGATGATTGCAGAATTTTCTACTTATTCTCACAGTGACTTAAATAGACCATTGGAAGATGACTGTCAAATTTTAGAAGAGGAAAGACTAGTATCTCTTGTATTTGGACTTTTAAAACAAAGAAAACTTAACTTTTTAGAAATATATAGTGAAGAAATGATTATTACAGCAAAGAATATCATTAAACAGGGTAAAGGGAATTTTCTCAACTTAGAGAACATCCTATATCGCAAGTRTATAGGAGTATCTTTTGAGAATAAAGTCCTAGGTGTAGCAGCGTTAATTAAAAATTTGGAGCTTGCAGATCAGATGAGAATGTTGAATTTTCTTCAGTGGTTTGATCTGCTAAAGGATATTTTCTCTAAGTTTACAATTTTCCTACAGAGAGTTAAGGCAACGTTAAATATCATTCACAGTGTTGTTCTCTCAGTTCTTGACAAAAATCAAAGGACTAGAGAATTGGAGGAGATTTCGCAGCAGAAGAATGCTGCAAAAGACAATTCACTGGACACGGAGGTGGCTTATTTAATCCATGAAGGCATGTTTATAAGCGATGCATTCAGTGAGAGTGAATTAACACCTATAACAATTGACACTACCTCTCAAAGAAATGCATCTCCAAATAGTGAGCCCTGCAGCAGTGATTCGGTATCCGAACCAGAATGTGCTACTGATTCTTCATCCAGCAAAGAGCAGACATCATCATCTGTTACTCCAGGAGCTGTGGATATTATGGTCAATGAAGACATGAAATTAACTGACTTAGAGCTGGGAAAGCTGGCAAATAATGTCCAGGAGTTATTATATAGTGCCTCAGATATATGCCATGATCGAGCCGTCAAATTTCTCATGTCAAGAGCAAAGGATGGTTTTCTTGAGAAACTAAATTCCACAGAATTCATAACACTTTCCAGATTAATGGAAACATTCATTTTAGAAACTGAACAGATCTGTGGAAGAAAAAGCATGTCATTACTTGGAGCACTTCAGAGCCAAGCTAATAAATTTGTAAACAGGTTTCATGAAGAGAGAAAAACCAAGCTCAGCCTCCTCTTAGACAATGAGCGCTGGAAGCAAGCTGATGTTCCCGCAGAATTTCAGGATCTTGTTGATTCTATAGCAGATGGAAAGATTGCTTTACCTGAAAAAAAATCAGGGGCTGCAGAAGAAAGGAAACCAGCTGAAGTTCTCATTGTCGAGGGACAACAGTATGCTGTTGTTGGAACCGTATTGCTGTTGATAAGAATTATCCTTGAATATTGCCAGTGTGTGGATAATATCCCATCTGTTACTACTGACATGCTCACTCGTCTATCAGATTTATTGAAGTACTTCAATTCAAGAAGTTGCCAGTTAGTTCTTGGAGCTGGTGCACTGCAAGTTGTTGGACTAAAAACAATAACTACAAAAAATTTGGCTCTTTCTTCACGCTGTTTGCAGTTAATCGTGCACTACATTCCTGTGATCAGGGCTCATTTTGAAGCTCGACTGCAGCCTAAGCAGTATAGTATGCTTAGGCATTTTGATCATATCACTAAGGACTACCATGACCACATAGCTGAAATATCAGCTAAGCTTGTAGCGATAATGGATAGCTTATTTGACAAGCTGTTATCTAAGTATGAAGTGAAAGCTCCCGTTCCTTCTGCCTGTTTCAGGAATATTTGTAAGCAAATGGCAAAAATGCATGAAGCTATATTTGATCTCCTTCCAGAAGAACAAACACAAATGTTATTTTTAAGAATTAATGCAAGTTACAAACTCCACTTGAAAAAGCAATTATCTCACTTAAATGTGATAAATGATGGAGGACCTCAAAATGGGTTGGTCACAGCAGATGTAGCTTTTTACACTGGAAATCTTCAAGCCTTAAAAGGCCTTAAAGATTTGGACCTAAATATGGCCGAGATCTGGGAACAGAAAAGGTGA

Related Sequences

bmy_01559T0 SequenceType object (3)

Length: 995 aa      View alignments
>bmy_01559T0
MASSHSSSPVPQGSSSDVFFKKEVDPAKHIRPVQSLPDVCPKEPTGDSNSLCVAPSLVTDQHRWTIYHSKVNLPAALNDPRLAKRESDFFTKTWGLDFVDTEVIPSFYLPQISKEHFTVYQQEISQREKIHERCKKICPPKDTFDRTLLHTHDKSRTDLEQVPKIFMKPDFALDDSLTFNSVLPWSHFNTAGGKGNRDAASSKLLQEKLSHYLDIVEVNIAHQISLRSEAFFHAMTSQHELQDYLKKTSQAVKMLRDKIAQIDKVMCEGSLHILRLALTRNNCVKVYNKLKLMATVHQTQPTVQVLLSTSEFVGALDLIATTQEVLQQELQGIHSFRHLGSQLCELEKLIDKMMIAEFSTYSHSDLNRPLEDDCQILEEERLVSLVFGLLKQRKLNFLEIYSEEMIITAKNIIKQGKGNFLNLENILYRKXIGVSFENKVLGVAALIKNLELADQMRMLNFLQWFDLLKDIFSKFTIFLQRVKATLNIIHSVVLSVLDKNQRTRELEEISQQKNAAKDNSLDTEVAYLIHEGMFISDAFSESELTPITIDTTSQRNASPNSEPCSSDSVSEPECATDSSSSKEQTSSSVTPGAVDIMVNEDMKLTDLELGKLANNVQELLYSASDICHDRAVKFLMSRAKDGFLEKLNSTEFITLSRLMETFILETEQICGRKSMSLLGALQSQANKFVNRFHEERKTKLSLLLDNERWKQADVPAEFQDLVDSIADGKIALPEKKSGAAEERKPAEVLIVEGQQYAVVGTVLLLIRIILEYCQCVDNIPSVTTDMLTRLSDLLKYFNSRSCQLVLGAGALQVVGLKTITTKNLALSSRCLQLIVHYIPVIRAHFEARLQPKQYSMLRHFDHITKDYHDHIAEISAKLVAIMDSLFDKLLSKYEVKAPVPSACFRNICKQMAKMHEAIFDLLPEEQTQMLFLRINASYKLHLKKQLSHLNVINDGGPQNGLVTADVAFYTGNLQALKGLKDLDLNMAEIWEQKR*