Sequence detailsbmy_01583 (Coding sequence)

Part of scaffold_40 (SequenceType object (1))

For more information consult the page for scaffold_40 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PATZ1ENSTTRG00000010279 (Bottlenosed dolphin)

Gene Details

POZ (BTB) and AT hook containing zinc finger 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000009750, Bottlenosed dolphin)

Protein Percentage 99.84%
cDNA percentage 99.27%
Ka/Ks Ratio 0.02162 (Ka = 0.0007, Ks = 0.0312)

PATZ1ENSBTAG00000005478 (Cow)

Gene Details

POZ-, AT hook-, and zinc finger-containing protein 1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000029432, Cow)

Protein Percentage 99.84%
cDNA percentage 96.15%
Ka/Ks Ratio 0.00285 (Ka = 0.0007, Ks = 0.2284)

PATZ1 (Minke Whale)

Gene Details

POZ (BTB) and AT hook containing zinc finger 1

External Links

Gene match (Identifier: BACU003315, Minke Whale)

Protein Percentage 99.84%
cDNA percentage 99.58%
Ka/Ks Ratio 0.03836 (Ka = 0.0007, Ks = 0.0174)

Additional orthologs identified in other species via the OPTIC pipeline.

PATZ1 (Human)   Patz1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1926 bp    Location:587368..605821   Strand:+
Raw sequence 
>bmy_01583
ATGGAGCGAGTGAACGACGCTTCCTGCGGCCCGTCGGGCTGCTACACCTACCAGGTGAGCAGACACAGCACGGAGATGCTGCACAACCTGAACCAGCAGCGCAAAAACGGCGGGCGCTTCTGCGACGTGCTCCTGCGGGTGGGCGACGAGAGCTTCCCAGCGCACCGCGCGGTGCTGGCTGCCTGCAGCGAGTACTTTGAGTCGGTGTTTAGCGCCCAGTTGGGCGACGGCGGAGCTGCGGACGGGGGTCCCGCTGACGTGGGGGGCGCAGCGGCGGCCCCGGGTGGCGGGGCTGGGGGCAGCCGGGAGCTGGAGATGCACACCATCAGCTCCAAGGTGTTCGGGGACATCCTGGACTTCGCCTACACTTCCCGCATTGTGGTTCGCCTGGAGAGCTTCCCCGAGCTTATGACGGCCGCCAAGTTTCTGCTGATGAGGTCGGTCATTGAGATCTGCCAGGAAGTCATCAAACAGTCCAATGTGCAGATCCTGGTGCCCCCTGCCCGGGCCGACATCATGCTGTTTCGTCCCCCTGGGACCTCGGACTTGGGTTTCCCTTTGGACATGACCAACGGGGCAGCCTTGGCAGCCAACAGCAATGGCATCGCAGGCAGCATGCAGCCTGAGGAGGAGGCAGCTCGGGCGGCTGGTGCAGCCATTGCGAGCCAAGCCTCCCTGCCTGTGTTACCTGGGGTGGACCGCTTGCCCATGGTGGCCGGACCCCTGTCCCCCCAACTGCTGACTTCCCCATTCCCCAATGTGGCATCCAGTGCCCCTCCCCTGACTGGCAAGCGAGGCCGGGGCCGCCCAAGGAAGGCCAACCTGCTGGACTCAATGTTCGGGTCCCCAGGGGGCCTGAGGGAGGCAGGCATCCTTCCATGTGGCCTGTGTGGGAAGGTGTTCACTGATGCCAACCGGCTCCGGCAGCACGAGGCCCAGCATGGTGTCACCAGCCTCCAGCTGGGCTACATCGACCTTCCTCCTCCGAGGCTGGGTGAGAATGGGCTACCCATCTCTGAGGACCCCGACGGCCCCCGAAAGAGGAGCCGGACCAGGAAGCAGGTGGCCTGCGAGATCTGCGGCAAGATCTTTCGTGATGTGTACCATCTCAATCGGCACAAGCTGTCCCACTCGGGGGAGAAGCCCTATTCCTGCCCCGTGTGTGGGCTGCGGTTCAAGAGGAAAGATCGCATGTCCTACCACGTGCGGTCCCACGATGGGTCCGTGGGCAAGCCCTACATCTGCCAGAGCTGTGGGAAAGGCTTCTCCAGGCCTGATCACTTGAACGGACATATCAAGCAGGTGCACACTTCTGAGCGGCCTCACAAGTGTCAGACCTGCAATGCTTCTTTTGCCACCCGAGACCGTCTGCGCTCCCACCTGGCCTGTCACGAAGACAAGGTGCCCTGCCAGGTATGCGGGAAGTACTTGAGGGCGGCGTACATGGCAGACCACCTGAAGAAGCACAGCGAGGGGCCCAGCAACTTCTGCAGTATCTGTAACCGAGAAGGCCAGAAATGCTCACATCAGGATCCGATTGAGAGCTCCGACTCCTACGGCGACCTCTCGGATGCCAGCGACCTGAAGACGCCCGAGAAACAGAGCACCAATGGATCCTTCTCCTGTGACATGGCGGTCCCCAAAAACAAAATGGAGTCTGACGGGGAGAAGAAGTACCCCTGCCCCGAGTGCGGGAGCTTCTTCCGCTCCAAGTCCTACTTGAACAAACACATCCAGAAGGTGCATGTCCGGGCCCTCGGGGGCCCCCTGGGGGACCTGGGCCCTGCCCTTGGCTCGCCTTTCTCTCCCCAGCAGAACATGTCTCTCCTCGAGTCCTTTGGGTTTCAGATTGTTCAGTCGGCGTTTGCATCATCTCTGGTAGATCCCGAGGTCGACCAGCAGCCCATGGGGCCTGAGGGCAAGTGA

Related Sequences

bmy_01583T0 SequenceType object (3)

Length: 642 aa      View alignments
>bmy_01583T0
MERVNDASCGPSGCYTYQVSRHSTEMLHNLNQQRKNGGRFCDVLLRVGDESFPAHRAVLAACSEYFESVFSAQLGDGGAADGGPADVGGAAAAPGGGAGGSRELEMHTISSKVFGDILDFAYTSRIVVRLESFPELMTAAKFLLMRSVIEICQEVIKQSNVQILVPPARADIMLFRPPGTSDLGFPLDMTNGAALAANSNGIAGSMQPEEEAARAAGAAIASQASLPVLPGVDRLPMVAGPLSPQLLTSPFPNVASSAPPLTGKRGRGRPRKANLLDSMFGSPGGLREAGILPCGLCGKVFTDANRLRQHEAQHGVTSLQLGYIDLPPPRLGENGLPISEDPDGPRKRSRTRKQVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQTCNASFATRDRLRSHLACHEDKVPCQVCGKYLRAAYMADHLKKHSEGPSNFCSICNREGQKCSHQDPIESSDSYGDLSDASDLKTPEKQSTNGSFSCDMAVPKNKMESDGEKKYPCPECGSFFRSKSYLNKHIQKVHVRALGGPLGDLGPALGSPFSPQQNMSLLESFGFQIVQSAFASSLVDPEVDQQPMGPEGK*