Part of scaffold_41 (Scaffold)

For more information consult the page for scaffold_41 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SCN11A ENSTTRG00000014033 (Bottlenosed dolphin)

Gene Details

sodium channel, voltage-gated, type XI, alpha subunit

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013323, Bottlenosed dolphin)

Protein Percentage 77.38%
cDNA percentage 78.25%
Ka/Ks Ratio 0.55375 (Ka = 0.027, Ks = 0.0488)

SCN11A ENSBTAG00000017174 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000022822, Cow)

Protein Percentage 85.02%
cDNA percentage 90.76%
Ka/Ks Ratio 0.61321 (Ka = 0.0859, Ks = 0.1402)

SCN11A  (Minke Whale)

Gene Details

sodium channel, voltage-gated, type XI, alpha subunit

External Links

Gene match (Identifier: BACU014615, Minke Whale)

Protein Percentage 97.82%
cDNA percentage 98.16%
Ka/Ks Ratio 0.32013 (Ka = 0.0115, Ks = 0.0359)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 5127 bp    Location:2430011..2360439   Strand:-
>bmy_01652
ATGGATGACAGGTGCTACCCGGTGATCTTCCCAGATGCAAGGAATTTCCGCCCCTTCACTCCTGACTCTTTGGCTGCAATCAAGAAGCGGATCGCCATCCAAAAGGAGAAAAAAAAGTCCAAAGACCAGACAGCAGCAGAACCCCAGCCTCGACCTCAGCTTGACCTAAAGGTGTCCAGAAAGTTGCCCATGCTCTATGGTGACATTCCCCATGAGCTGATAGGGAAACCCCTGGAAGACTTGGACCCATTCTACAGAAATCATAAGACATTTATGGTGTTGAACAAAAAGAGAACAATCTACCGCTTCAGTGCCAAACGTGCCTTGTATGTCTTCACTGGGATTTATATATTTGAAGCATTAGTTAAAATATTGGCAAGAGGTTTTATTCTGGATGAGTTTTCTTTCCTTCGAGATCCGTGGAACTGGCTGGACTCCATTGTCATTGCAACAGCGTTTGTATCATATTCACCATATATCAAGGGCAGCAGCATCAGTCTGTCATCCCTGCGTACCTTCCGAGTGTTCAGAGCTTTGAAAGCAATTTCAGTAATTTCAGGTCTGAAGGTCATTGTTGGGGCCTTGCTGCGCTCTGTGAAGAGGCTTGTCGATGTGATGATCCTGACTCTCTTTTGCCTCAGCATCTTCGCCCTGGTAGGTCAGCAACTCTTCATGGGAAATCTGAACCAGAAATGTGTGAGGAAAGACTGTGACTCTGACTATAAAGACTATTGCTTTGAAAAGAAAGATTCCACTGAATTCAGAATATGTGGCACATGGATGGAGAGCGGGGCTTGTTCTGAACAATTTGAATGCAAACATACCAATAAWAATCCTGACTATAATTACACGAATTTTGACAACTTTGGCTGGTCTTTTCTTGCCGTGTTCCGGCTTATGACCCAAGATTCCTGGGAGAAGCTTTATCAACAGACTTTGCGCRCCTCAGGGCTCTACTCAGTCTTCTTCTTTGTGGTGGTCATCTTCCTGGGCTCTTTCTACTTGATTAACTTAACCCTGGCTGTTGTCACCATGGCTTATGAGGAACAGAACAAGAATGTAGCTGCTGAGACAGAAGCCAAGGAGAAGATGTTCCAGGAAGCCCAGCAGCTGTTAAAGGAGGAGAAGGAGGCTCTGGTTGCCATGGGTATTGACAGAAGCTCACTTAATTCCCTTGAAGCATCATCTTTTTCCCTGAAGAAGAGAAAGCTATTTGGTAATAAGAAAAGAAAATCCTTCTTTTTGAGAAAGTCTGGGAAAGACCAGGTTCCAGGATTAGATTCTGATGAAGATTCTTCAAAAAAGGCAAGTTTTGGCCAAGGGATTGATGATACTTTAGCACTGTTCAGGGGGACAGGTCAACCACACCTACTTGAACAAACCAAACGACTGTCCCAGAATCTGTCAGTGGACCACTGTGATGAGCACGGAGACCCCTTCCAAAGGCAGAGAGCACTGAGCGCTGTGAGCATCCTTACCATCACCATGCACGAACAAGAAAAATCACAGGAACCTTGCCTCCCATGTGGGGAAAACCTGGCATCCAAATACCTCGTGTGGGACTGTAGCCCCCGGTGGCTGTGCATTAAGAAGGCCCTGAGAACCATGATGACTGACCCCTTTACTGAGCTGGCCATCACCATCTGCATCATAATCAACACTCTCTTCTTGGCCATGGAGCATTACAAAATGGACCAGAGTTTTGAGAATATGTTGTACACAGGGAATTTGGTTTTCACTGGCATTTTCATGGCTGAAATGTGCCTAAAAATCATTGCGCTGGATCCCTACCACTACTTTCGTCGAGGCTGGAACATTTTTGACAGCATTGTTGCTCTTCTGAGCTTTGCAGAGGTGATAATAAATAGTATGTGTCCAGGAAAACAAAGTTGTATGTCACTTCGTTCCTTAAGAGTGCTGAGGGTCTTCAAGTTAGCCAAATCCTGGCCAACTTTAAACACACTGCTTAAGATAATTGGCCATTCCGTTGGAGCCCTTGGAAACCTGACTGTGGTCTTGGCCATTGTGGTCTTTATTTTCTCAGTAGTTGGCATGCAGCTTTTTGGCTCTAAATTCAATTGCATAAAGAGTAATTCAAAGTYCCATGATCCTGCAGTCTCATGTTTACGACGCTGGCACATGGGGGATTTCTACCACTCCTTTCTGGTGGTATTCCGCATCCTCTGTGGGGAATGGATCGAAAACATGTGGGAATGTATGCAAGAAGCTAACCAAGCACTGTGYATTACTGTGTTTCTGTTGATCATGGTGATAGGAAAACTCGTGGTACTCAACCTCTTTATTGCCTTGCTGCTCAATTCCTTCAGCAATGAGGAGAGAGATGGACACTTGGAAGGAGAAGTCAGGAAAACCAAAGTCCAGTTAGCCCTGGACCGGTTCTGCCRGGCTTTTTGTTTTGTGATATATACTCTTGAGCATTTTTGTACCAAGTGGTGCAGGAGACAACATTTACCAAAGCAAAAAGAGGTGACAGAAGGCCCTAAGGCAGAGAGCAAAGGTGTCATTCCCCTGGTCACAGAGATGAGAAAGTGCCCAGAGACCTGGGAGGAGTTTGGTGTACTGACTTCCGCACCAAAGACCTTGAGTGTCGGGCATGATCGGACTTGGTTGGCCCCACTAGCAGAGGAAGAAGATGATGCTGAATCCCCTGGTGAAGATAAGGCACAGCCTGTCACGCAACCTGAGGCTGGAAAACAGTGTCAGGCCAGTGAACTCCATCAGAAGACCAAGGAGCCCACCAGTCCAGGAGCTCAGAGTGTGGAAATGGACATATTCTCTGAAGATGATCCTTATCTGTCGAYACAGAATCCCCGAAAGAAGTCTGATGCTACGAGTGTGCTCTCAGAATGTAGCACCACTGGTCCACAGGATCCCTTTAGGCGGGTACTTGAAATGGTTCCCAAAAAGGAACCAGAGAGATGTTTGCCCAAAGGTGGGGTCAACTTGTACAGCCCAACTACCAGGGTAGAAAATCTAGAAAACTTTCCCAGAAAGCCCACTGGGCCAGTATTTGAAGATATTTACCTTGGTACACAACCCAAAATCCAAGCAATACTTAATTGTACTGACAGTATTTTCACATACATTTTTATCTTGGAGATGGGTCTGAAATGGGTGGCCTTTGGATTTAGGAAGTATTTCACCAGTGCCTGGTGCTGGCTCGATTTCATCATTGTGATTGTCTCTGTGACCAGTCTCATCGACTTAAAGGTCTTGAAGTCCTTCCGGATTCTGCGAGCGCTGAGGCCTCTGCGAGCGCTGTCCCAGTTTGAAGGAATGAAGGTGGTAGTTAATGCTCTCATAGGTGCCATACCTGCCATTCTGAATGTTTTGCTTGTCTGCCTCATTTTCTGGCTCATATTTTGTATCCTGGGAGTAAGTTTGTTTTCTGGAAAATTTGGAAGATGTGTTAATGTAACAGATGGAAACTCAGTTATAAATTACAACATTGTTGCAAACCGGAGTCAATGTGAAAGTGGAAATTTCTCCTGGTTCACCCTGAAAGTCAACTTTGACAATGTGGGAATGGCTTACCTCGCGCTGCTGCAAGTGGCAACATTTAAGGGCTGGATGGATATTATGTAYGCAGCTGTTGATTCCAGAGGGGAAGGACAACAGCCAAGGTTTGAGGAGAACTCATTAATGTATGTTTACTTCGTAGTTTTTATCATCTTTGGCTCATTCTTCACTCTGAATCTCTTTATTGGTGGCCAAGACATCTTTCTGACAGAAGAACAGAAGAAATACTATAATGCAATGAAAAAATTAGGATCCAAAAGACCTCAAAGGCCCATCCCAAGGCCTCTGAACAAATGCCAGGGTCTTGTTTTTGACCTAGTTACACACCAGGTCTTTGACATCATCATCATCATCCTCATTTTCCTCAACATGGTTAGCATGATGGCTGAATCATATGGCCAGTCCAAAGCCATGGAACTCTTCCTTGAGCGTCTCAACCTGGCCTTTGTGGTCGTCTTTACAATTGAGTGTCTCATCAAAATCTTTGCTTTGAGGCAGTACTACTTCATCAGTGGCTGGAATTTATTTGATTGTGTGATCCTGGTCATTTCTATTGTTAGTACAATGGTTTCTGCCTTGAAAACCCAGGCACACATTCCTTTCCCTCCAACACTCTTCAGAATTGTCCGCCTGGCTCGGATTGGCCGAATCCTGAGACTTGTTCGGGCAGCACGAGGAATCAGAACTCTCCTTTTCGCGCTGATGATGTCTCTTCCCTCTCTATTCAATATTGGTCTTCTACTCTTTCTGGTTATGTTTATTTATGCCATTTTTGGTATGAACTGTTTTTGCAAAGTGAAGGAAGAGTCTGGAATTGATGACATATTCAACTTCAAAACTTTCAAAGGCAGCATGCTCTGCCTCTTCCAGATAACCACGTCAGCAGGCTGGGATGCCCTCCTCAGCCCCATGTTGCAATCAAAAGACTCATGTAACCCCAAGTTAGAGAACTGTCACCTCTCTGCCATAGCCATAACCTACTTCGTCAGTTATATCATCATCTCCTTTCTCATCGTGGTCAACATGTATATTGCTGTGATTTTAGAAAACTTCAATATAGCCACTGAAGAAAGTGAGGACCCTTTGAGTGAAGACGACTTTGAAATATTCTACGAAGTCTGGGAAAAGTTTGACCCAGAAGCAACACAGTTTATCAGATATTCTGCTCTTTCTGACTTTGCCGATGCCCTGCCTGAGCCTCTGCGTGTGGCAAAGCCAAATAAATACCAATTTTTAGTCATGGACTTGCCCATGGTGAGCGGAGATCGCCTTCATTGCCTGGATATTCTGTTCGCTTTCACCGCTAGGGTACTTGGTGAGTCCAGTGGCCTGGATAGCATGAAAGCAGTGATGGAAGAGAAGTTCATGGAAGCCAACCCTTTCAAGAAGTTATATGAACCCATAGTCACCACCACCAAGAGGAAGGAAGAGGAAAGATGTGCTGCTGTTATTCAAAAGGCCTTTAGAAAGTACATGATGAAGACCAAGTGTACCTTGGAAGACAGGCCTCATTCACCCCTCCAGACACTCTGCAATGGAGACTTGTCCAGCTCTGGGGTGGCCGAGGGCAAGGTCCACTATGACTGA

Related Sequences

bmy_01652T0 Protein

Length: 1709 aa      View alignments
>bmy_01652T0
MDDRCYPVIFPDARNFRPFTPDSLAAIKKRIAIQKEKKKSKDQTAAEPQPRPQLDLKVSRKLPMLYGDIPHELIGKPLEDLDPFYRNHKTFMVLNKKRTIYRFSAKRALYVFTGIYIFEALVKILARGFILDEFSFLRDPWNWLDSIVIATAFVSYSPYIKGSSISLSSLRTFRVFRALKAISVISGLKVIVGALLRSVKRLVDVMILTLFCLSIFALVGQQLFMGNLNQKCVRKDCDSDYKDYCFEKKDSTEFRICGTWMESGACSEQFECKHTNXNPDYNYTNFDNFGWSFLAVFRLMTQDSWEKLYQQTLRXSGLYSVFFFVVVIFLGSFYLINLTLAVVTMAYEEQNKNVAAETEAKEKMFQEAQQLLKEEKEALVAMGIDRSSLNSLEASSFSLKKRKLFGNKKRKSFFLRKSGKDQVPGLDSDEDSSKKASFGQGIDDTLALFRGTGQPHLLEQTKRLSQNLSVDHCDEHGDPFQRQRALSAVSILTITMHEQEKSQEPCLPCGENLASKYLVWDCSPRWLCIKKALRTMMTDPFTELAITICIIINTLFLAMEHYKMDQSFENMLYTGNLVFTGIFMAEMCLKIIALDPYHYFRRGWNIFDSIVALLSFAEVIINSMCPGKQSCMSLRSLRVLRVFKLAKSWPTLNTLLKIIGHSVGALGNLTVVLAIVVFIFSVVGMQLFGSKFNCIKSNSKXHDPAVSCLRRWHMGDFYHSFLVVFRILCGEWIENMWECMQEANQALCITVFLLIMVIGKLVVLNLFIALLLNSFSNEERDGHLEGEVRKTKVQLALDRFCXAFCFVIYTLEHFCTKWCRRQHLPKQKEVTEGPKAESKGVIPLVTEMRKCPETWEEFGVLTSAPKTLSVGHDRTWLAPLAEEEDDAESPGEDKAQPVTQPEAGKQCQASELHQKTKEPTSPGAQSVEMDIFSEDDPYLSXQNPRKKSDATSVLSECSTTGPQDPFRRVLEMVPKKEPERCLPKGGVNLYSPTTRVENLENFPRKPTGPVFEDIYLGTQPKIQAILNCTDSIFTYIFILEMGLKWVAFGFRKYFTSAWCWLDFIIVIVSVTSLIDLKVLKSFRILRALRPLRALSQFEGMKVVVNALIGAIPAILNVLLVCLIFWLIFCILGVSLFSGKFGRCVNVTDGNSVINYNIVANRSQCESGNFSWFTLKVNFDNVGMAYLALLQVATFKGWMDIMYAAVDSRGEGQQPRFEENSLMYVYFVVFIIFGSFFTLNLFIGGQDIFLTEEQKKYYNAMKKLGSKRPQRPIPRPLNKCQGLVFDLVTHQVFDIIIIILIFLNMVSMMAESYGQSKAMELFLERLNLAFVVVFTIECLIKIFALRQYYFISGWNLFDCVILVISIVSTMVSALKTQAHIPFPPTLFRIVRLARIGRILRLVRAARGIRTLLFALMMSLPSLFNIGLLLFLVMFIYAIFGMNCFCKVKEESGIDDIFNFKTFKGSMLCLFQITTSAGWDALLSPMLQSKDSCNPKLENCHLSAIAITYFVSYIIISFLIVVNMYIAVILENFNIATEESEDPLSEDDFEIFYEVWEKFDPEATQFIRYSALSDFADALPEPLRVAKPNKYQFLVMDLPMVSGDRLHCLDILFAFTARVLGESSGLDSMKAVMEEKFMEANPFKKLYEPIVTTTKRKEEERCAAVIQKAFRKYMMKTKCTLEDRPHSPLQTLCNGDLSSSGVAEGKVHYD*