Sequence detailsbmy_01653 (Coding sequence)

Part of scaffold_41 (SequenceType object (1))

For more information consult the page for scaffold_41 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

WDR48ENSTTRG00000006104 (Bottlenosed dolphin)

Gene Details

WD repeat domain 48

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000005774, Bottlenosed dolphin)

Protein Percentage 96.7%
cDNA percentage 96.99%
Ka/Ks Ratio 0.37442 (Ka = 0.0231, Ks = 0.0617)

BT.64382ENSBTAG00000003745 (Cow)

Gene Details

WD repeat-containing protein 48

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000004876, Cow)

Protein Percentage 96.88%
cDNA percentage 94.1%
Ka/Ks Ratio 0.11098 (Ka = 0.0224, Ks = 0.2015)

WDR48 (Minke Whale)

Gene Details

WD repeat domain 48

External Links

Gene match (Identifier: BACU019115, Minke Whale)

Protein Percentage 99.29%
cDNA percentage 99.23%
Ka/Ks Ratio 0.30858 (Ka = 0.0054, Ks = 0.0174)

Additional orthologs identified in other species via the OPTIC pipeline.

WDR48 (Human)   Wdr48 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 1746 bp    Location:2488344..2533316   Strand:+
Raw sequence 
>bmy_01653
ATGAAGAATGAGCACATGTCCTACCATCTTCAACTTCTAAGGAGACTGGAGGTTTCCTATGTTATTCGAGATGAAGTGGAGAAGTACAACCGAAATGGGGTCAATGCCCTGCAGCTGGACCCAGCACTAAACAGACTTTTCACGGCAGGTCGAGACTCCATCATAAGAATATGGAGTGTCAATCAGCACAAGCAAGATCCATATATAGCATCTATGGAACACCATACCGATTGGGATTATGTAAAAGCCTTAGCATATGCCAAGGATAAAGAACTGGTAGCATCGGCTGGGTTGGACCGACAAATATTCCTTTGGGATGTGAATACTCTAACAGCATTGACTGCCTCAAATAACACTGTCACAACTTCTTCTTTAAGTGGGAACAAAGATTCCATTTATAGCCTGGCAATGAATCAACTGGGAACAATCATTGTATCAGGGTCCACTGAGAAGGTTTTAAGAGTATGGGATCCAAGAACATGTGCAAAACTAATGAAGCTTAAAGGGCACACGGATAATGTTAAAGCATTGCTGTTGAACAGAGATGGCACACAGTGCCTTTCCGGCAGTTCTGATGGGACAATTCGCCTTTGGTCCCTTGGCCAGCAGAGATGTATAGCAACGTACCGAGTGCATGATGAAGGTGTTTGGGCTCTACAGGTCAATGACACCTTCACACATGTGTACTCTGGAGGAAGGGACAGGAAGATTTATTGTACAGACCTAAGAAACCCTGACATTCGGGTGCTAATTTGTGAAGAAAAAGCACCAGTTCTCAAGATGGAGCTTGACAGATCAGCTGATCCCCCTCCTGCAATCTGGGTTGCAACAACGAAGTCTACAGTAAATAAATGGCATGAAGAACAGACATTGAAAGGAATTCATAATTTTAGAGCCTCTGGAGATTATGACAATGACTGTACAAATCCTATAACACCCCTTTGTACACAACCTGACCAGGTTATTAAAGGGGGTGCTAGTATTATTCAGTGTCACATTCTTAATGATAAGAGACATATATTAACCAAAGATACCAATAATAATGTGGCATATTGGGATGTATTAAAGATGTTGACAATTACTTTGGATGAGAGTGACTGTTTTGCTGCTTGGGTTTCTGCAAAAGATGCTGGCTTTAGCAGCCCTGACGGGTCAGATCCAAAATTGAACTTAGGAGGACTTTTACTCCAGGCCCTCCTAGAATATTGGCCTAGGACACATGTGAATCCAATAGATGAAGAAGAAAATGAAGTAAACCATGTAAATGGGGAGCAGGAGAACCGAGTACAGAAGGGAAATGGCTATTTCCAGGTGCCCCCGCACACTCCTGTGATCTTTGGTGAAGCTGGAGGTCGCACCTTGTTCAGAATTCAGATTTTGAAAAATATGCCCAAATTCAACAAAATTCCTTTCTACCTCCAACCTCATGCATCTTCAGGAGCAAAAACCTTAAAAAAAGATAGACTCTCTGCTAGTGACATGCTTCAAGTCCGGAAAGTAATGGAACACGTCTATGAGAAAATCATCAACTTGGATAATGAGTCTCAAACCACTAGCTCTTCTAATAATGAAAAACCAGGAGAACAGGAAAAAGAAGAGGATATTGCTGTGTTGGCAGAGGAGAAAATTGAACTTTTGTGCCAGGACCAGGTTTTGGATCCAAATATGGACCTTCGAACAGTGAAACACTTCATATGGAAGAGTGGTGGTGACCTCACCCTCCATTACCGTCAGAAGTCCACGTGA

Related Sequences

bmy_01653T0 SequenceType object (3)

Length: 582 aa      View alignments
>bmy_01653T0
MKNEHMSYHLQLLRRLEVSYVIRDEVEKYNRNGVNALQLDPALNRLFTAGRDSIIRIWSVNQHKQDPYIASMEHHTDWDYVKALAYAKDKELVASAGLDRQIFLWDVNTLTALTASNNTVTTSSLSGNKDSIYSLAMNQLGTIIVSGSTEKVLRVWDPRTCAKLMKLKGHTDNVKALLLNRDGTQCLSGSSDGTIRLWSLGQQRCIATYRVHDEGVWALQVNDTFTHVYSGGRDRKIYCTDLRNPDIRVLICEEKAPVLKMELDRSADPPPAIWVATTKSTVNKWHEEQTLKGIHNFRASGDYDNDCTNPITPLCTQPDQVIKGGASIIQCHILNDKRHILTKDTNNNVAYWDVLKMLTITLDESDCFAAWVSAKDAGFSSPDGSDPKLNLGGLLLQALLEYWPRTHVNPIDEEENEVNHVNGEQENRVQKGNGYFQVPPHTPVIFGEAGGRTLFRIQILKNMPKFNKIPFYLQPHASSGAKTLKKDRLSASDMLQVRKVMEHVYEKIINLDNESQTTSSSNNEKPGEQEKEEDIAVLAEEKIELLCQDQVLDPNMDLRTVKHFIWKSGGDLTLHYRQKST*