Sequence detailsbmy_01715 (Coding sequence)

Part of scaffold_43 (SequenceType object (1))

For more information consult the page for scaffold_43 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

PER1ENSTTRG00000010313 (Bottlenosed dolphin)

Gene Details

period circadian clock 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000009787, Bottlenosed dolphin)

Protein Percentage 95.19%
cDNA percentage 95.55%
Ka/Ks Ratio 0.27076 (Ka = 0.0278, Ks = 0.1027)

PER1ENSBTAG00000003889 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000005076, Cow)

Protein Percentage 92.15%
cDNA percentage 90.59%
Ka/Ks Ratio 0.13274 (Ka = 0.0417, Ks = 0.3144)

Additional orthologs identified in other species via the OPTIC pipeline.

PER1 (Human)   Per1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2463 bp    Location:1625509..1639852   Strand:+
Raw sequence 
>bmy_01715
ATGAGCGRCCCCCTCGAAGGGGCTGATGGGGGAGGGGACCCCAGGCCGGGGGAATCCTTTTGTCCTGGAGGGGCTCCATCCCCTGGGCCTCCACAGCATCGACCTTGTCCTGGCCCCAGCCTGGCTGACGACACGGATGCCAACAGCAATGGCTCCAGCGGCAATGAGTCCAATGGACCGGAGTCCAGGGGTGCATCTCAGCGGAGCTCACATAGCTCCTCCTCCGGCAATGGCAAGGACTCGGCCCTGCTGGACACCACTGAAAGCAGCAAGAGCACAAACTCTCAGAGCCCATCCCCACCCAGCAGTTCCATTGCCTACAGCCTCCTGAGTGCCAGCTCAGAGCAGGACAACCCGTCTACCAGTGGCTGCAGGTTCGTGAGCAGTGAACAGTCTGCCCGGGCAAGGACCCAGAAAGAACTCATGACGGCGCTGCGGGAGCTCAAGCTTCGGCTGCCACCAGAGCGCAGGGGCAAGGGCCGCTCTGGGACCCTGGCCACGCTGCAGTACGCACTGGCCTGTGTCAAGCAGGTGCAAGGCCGCATCGTCTACATTTCTGAGCAGGCAGGTATCCTGCTGCGCTGCAAGCAGGATGTGTTCCGCGGTGCCCGCTTCTCAGAGCTCCTGGCTCCCCAGGATGTGGGCGTCTTCTATGGTTCCACTGCCCCATCTCGCCTGCCCACCTGGGGCACGGGGGCCTTGGCAGGTTCAGGCCTCAAGGACTTCACCCAGGAGAAGTCTGTCTTCTGCCGTATCAGAGGGGGTCCTGACCGAGATCCAGGGCCTAGGTACCAGCCATTCCGCCTAACCCCATATGTGACCAAGATCCGGGTCTCTGATGGGGCCCCTGCACAGCCGTGCTGCCTGCTCATCGCAGAGCGCATCCACTCTGGTTATGAAGCTCCCCGGATTCCCCCCGACAAGAGGATCTTCACTACGAGGCACACGCCCAGCTGCCTCTTCCAGGATGTGGATGAAAGGGCCGCCCCGTTGCTGGGCTACCTCCCCCAGGACCTCCTGGGGGCCCCAGTGCTCCTTTTCCTGCATCCTGAGGACCGACCCCTCATGCTGGCCATCCACAAGAAGATCCTGCAGCTGGCTGGCCAGCCCTTTGACCACTCCCCTATCCGCTTCTGCGCCCGGAACGGGGAGTACGTCACCATGGACACCAGCTGGGCTGGCTTCGTGCACCCCTGGAGCCGCAAGGTGGCCTTTGTGTTGGGCCGCCACAAAGTACGCACGGGGCCCCTGAATGAAGACGTGTTCACTCCCCCAGTCCCCAGCCCCGCTCTCTCCCTGGACCCTGATATCCAGGAGCTCTCTGAGCAGATCCAYCGGCTGCTGTTACAGCCTGTGCACAGCCCCAGCCCCACGGGGTTCTGTGGAGTCGGCCCGGTGACTTCCCCAGGCCCTCTCCTCAGCCCTGGCTCCTCCAGTGCCAGCAACGGGGGTGACGCCGAGGGACCTGGGCCTCCTGCGCCGTCAGTACTGCCAAGCCCAGAGGAGTCTCGTCCACCTCCTTTTCTTTCTCGTCCTGCTCTCATCGTGATCTCCGCGTCTCCCCACTGGGGCCTTTTTCTTGCGCTAAGCCCTGGGCTCCCCAGGCTGGCCACGCCCCCCCCCAATGCTGCCCACTGCCCTGCCCCACAGGTGACCTTCCAGCAGATCTGTAAGGATGTGCACCTGGTGAAGCATCAGGGGCAGCAGCTTTTTATTGAGTCCCGGGCCCGGCCTCTGCCCCGGCCCCGCGTCCCTGGTGAGTTGGTGAGAGTGTGGGTGAGGAGTGAGGCCTGGGGCGGGGCGGGTCCCATGACCTTCACCCCAACCCAGAGGAGCTTTTCTCTCCTCGGCCCAGCTACAGGCACATTCAAGGCCAAGACCCTTCCCTGCCAATCCGCAGACCCAGAGTTGGAGGTGGCACCTGCTCCAATCCAGGCCCCACTAGCCTTGGCTCCTGAGGAGGCTGAGCGGAAAGAAGCCTCCAGTTGCTCCTACCAGCAGATCAACTGCCTGGACAGCATCCTCAGGTACCTGGAGAGCTGCAACCTCCCCAGCACGACCAAGCGCAAATGCACCTCCTCCTCCTCCTGCACCGCCTCTTCGGCCTCCGACGAGGACAGGCAGCGGGCGGGCGCGGTTTCTGTGGGGGCCGAGAAAGATCCATCGGCAGTGCTGTCTGGGGAGGGGGCCGCCCCTCTGAAGGAGCCGGTGGTGGGAGGAGGTGCCCTGAGCCCGCTCGCCCTGGCCAATAAGGCGGAGAGCGTGGTGTCCGTCACCAGTCAGTGTAGCTTCAGCTCCACCATCGTCCATGTGGGAGACAAGAAGCCCCCGGAATCGGGTACGGGCGTGGCTGAGGGGGGCGGTGCCCGGGCTCCATCTGGTCCCCCAGCCAGCGTTCCCCCCCCACCACCTGCCTTCTCCCGCCCTCTGGTTCCTGATGGAGAGAAGGAGCCCCCGTCTTAG

Related Sequences

bmy_01715T0 SequenceType object (3)

Length: 821 aa      View alignments
>bmy_01715T0
MSXPLEGADGGGDPRPGESFCPGGAPSPGPPQHRPCPGPSLADDTDANSNGSSGNESNGPESRGASQRSSHSSSSGNGKDSALLDTTESSKSTNSQSPSPPSSSIAYSLLSASSEQDNPSTSGCRFVSSEQSARARTQKELMTALRELKLRLPPERRGKGRSGTLATLQYALACVKQVQGRIVYISEQAGILLRCKQDVFRGARFSELLAPQDVGVFYGSTAPSRLPTWGTGALAGSGLKDFTQEKSVFCRIRGGPDRDPGPRYQPFRLTPYVTKIRVSDGAPAQPCCLLIAERIHSGYEAPRIPPDKRIFTTRHTPSCLFQDVDERAAPLLGYLPQDLLGAPVLLFLHPEDRPLMLAIHKKILQLAGQPFDHSPIRFCARNGEYVTMDTSWAGFVHPWSRKVAFVLGRHKVRTGPLNEDVFTPPVPSPALSLDPDIQELSEQIHRLLLQPVHSPSPTGFCGVGPVTSPGPLLSPGSSSASNGGDAEGPGPPAPSVLPSPEESRPPPFLSRPALIVISASPHWGLFLALSPGLPRLATPPPNAAHCPAPQVTFQQICKDVHLVKHQGQQLFIESRARPLPRPRVPGELVRVWVRSEAWGGAGPMTFTPTQRSFSLLGPATGTFKAKTLPCQSADPELEVAPAPIQAPLALAPEEAERKEASSCSYQQINCLDSILRYLESCNLPSTTKRKCTSSSSCTASSASDEDRQRAGAVSVGAEKDPSAVLSGEGAAPLKEPVVGGGALSPLALANKAESVVSVTSQCSFSSTIVHVGDKKPPESGTGVAEGGGARAPSGPPASVPPPPPAFSRPLVPDGEKEPPS*