Part of scaffold_43 (Scaffold)

For more information consult the page for scaffold_43 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

TRAPPC1 ENSTTRG00000010306 (Bottlenosed dolphin)

Gene Details

trafficking protein particle complex 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000009779, Bottlenosed dolphin)

Protein Percentage 100.0%
cDNA percentage 99.54%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0192)

TRAPPC1 ENSBTAG00000047214 (Cow)

Gene Details

Trafficking protein particle complex subunit 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000055462, Cow)

Protein Percentage 100.0%
cDNA percentage 97.24%
Ka/Ks Ratio 0.001 (Ka = 0.0001, Ks = 0.1439)

TRAPPC1  (Minke Whale)

Gene Details

trafficking protein particle complex 1

External Links

Gene match (Identifier: BACU001227, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.54%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0191)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 540 bp    Location:1799217..1800842   Strand:+
>bmy_01721
GGGGGAGGGGTCCACGTCTGGTTGGAGGGATCCCGGGCTGAGAACTGGAGCCTACGGGGTGTGGGCGGTCCCGGAGCGAGGCTCACATTCTCTGCCCTGCAGATGACTGTCCACAACCTGTACCTGTTTGACCGGAATGGAGTGTGTCTGCATTACAGCGAGTGGCACCGCAAGAAGCAAGCGGGGATCCCCAAGGAGGAGGAGTACAAGCTGATGTACGGGATGCTCTTCTCTATCCGCTCGTTTGTCAGCAAGATGTCCCCGCTGGACATGAAGGACGGCTTCCTGGCCTTCCAAACTAGCCGTTACAAACTCCATTACTACGAGACGCCCACTGGGATCAAGGTTGTCATGAACACTGACTTGGGCGTGGGACCCATCCGAGATGTGCTGCACCACATCTACAGTGCGCTGTACGTGGAGCTGGTGGTGAAGAATCCCCTGTGCCCGCTGGGCCAAACTGTGCAAAGTGAGCTCTTCCGCTCCCGACTGGACTCCTACGTCCGCTCTCTGCCCTTCTTCTCCGCCCGGGCTGGCTGA

Related Sequences

bmy_01721T0 Protein

Length: 180 aa      View alignments
>bmy_01721T0
GGGVHVWLEGSRAENWSLRGVGGPGARLTFSALQMTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQTVQSELFRSRLDSYVRSLPFFSARAG*