Part of scaffold_43 (Scaffold)

For more information consult the page for scaffold_43 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

POLR2A ENSTTRG00000014273 (Bottlenosed dolphin)

Gene Details

polymerase (RNA) II (DNA directed) polypeptide A, 220kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000013530, Bottlenosed dolphin)

Protein Percentage 98.62%
cDNA percentage 97.65%
Ka/Ks Ratio 0.07212 (Ka = 0.0049, Ks = 0.0684)

BT.64620 ENSBTAG00000046765 (Cow)

Gene Details

DNA-directed RNA polymerase II subunit RPB1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000055142, Cow)

Protein Percentage 99.09%
cDNA percentage 93.48%
Ka/Ks Ratio 0.01928 (Ka = 0.0065, Ks = 0.3348)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 6180 bp    Location:2168713..2149246   Strand:-
>bmy_01742
ATGCATGGGGGTGGCCCCCCCTCCGGGGACAGCGCATGCCCGCTGCGCACCATCAAGAGAGTGCAGTTCGGAGTCCTCAGTCCGGATGAACTGAAACGAATGTCTGTGACAGAGGGCGGCATCAAATACCCAGAGACCACCGAGGGAGGCCGCCCCAAGCTTGGGGGACTGATGGATCCGAGGCAGGGGGTGATTGAGAGGACTGGCCGCTGCCAAACCTGTGCAGGAAACATGACAGAGTGTCCTGGCCACTTTGGCCACATTGAGCTGGCCAAACCTGTGTTCCATGTCGGCTTCCTGGTCAAGACAATGAAAGTTTTGCGCTGCGTCTGCTTCTTCTGCTCCAAGTTGCTTGTGGACTCTGTGAGTGGGAGATGGGCTCTGGCCTGGGGGCGGGGTTGCTGGGGGGTGGGCAGGGGAGCAGCCCCAACGGACCCCGCTCTGCTCTGTCCCCAGAACAACCCGAAGATCAAGGACATTTTGGCTAAGTCCAAGGGGCAGCCCAAGAAGCGGCTCACACACGTCTATGACCTCTGCAAGGGCAAAAACATCTGCGAGGGCGGGGAGGAGATGGACAACAAGTTCGGCGTGGAGCAGCCTGAGGGCGATGAGGATTTGACCAAAGAAAAGGGCCACGGCGGCTGTGGGCGGTACCAGCCCAGGATCCGGCGCTCCGGCCTGGAGCTGTATGCAGAGTGGAAGCACGTCAACGAGGACTCTCAGGAGAAGAAGATCCTGCTGAGTCCTGAGCGGGTGCACGAGATCTTCAAACGCATCTCAGATGAGGAGTGCTTCGTCCTGGGCATGGAGCCTCGCTACGCCCGGCCCGAGTGGATGATTGTCACTGTGCTGCCCGTGCCCCCGCTCTCTGTGCGGCCCGCCGTTGTGATGCAGGGCTCTGCCCGCAACCAGGATGACCTGACACACAAACTGGCCGACATCGTGAAGATCAACAATCAGCTTCGGCGCAATGAGCAGAATGGCGCGGCCGCCCATGTCATCGCTGAGGACGTGAAGCTCCTCCAGTTTCACGTGGCCACCATGGTGGACAACGAGCTGCCTGGCTTGCCTCGTGCCATGCAGAAGTCTGGGCGTCCCCTCAAGTCCCTGAAGCAGCGGTTGAAGGGCAAGGAAGGCCGTGTGCGCGGGAACCTGATGGGCAAGCGGGTGGACTTCTCGGCCCGCACTGTCATCACCCCCGACCCCAACCTCTCCATTGACCAGGTTGGCGTGCCTCGCTCCATTGCCGCCAACATGACCTTTGCGGAGATCGTCACCCCCTTCAACATTGACAGACTTCAGGAACTAGTGCGCAGGGGGAACAGCCAGTACCCAGGGGCCAAGTACATCATCCGGGACAACGGTGATCGCATTGACCTGCGTTTCCACCCCAAGCCCAGTGACCTTCACCTGCAGACTGGCTATAAGGCATGTAATAGGCCAGGGCCTCTCTTACCTGAGCAGGAAGCTTTCTGGACTGGGGGCCAGCTGGAGTGGGCCGTGGAACGGCACATGTGCGACGGCGACATTGTTATCTTCAACCGGCAGCCAACTTTGCACAAAATGTCCATGATGGGACATCGGGTTCGCATCCTGCCCTGGTCTACTTTTCGCTTGAATCTTAGTGTGACAACTCCATACAATGCCGATTTTGATGGGGATGAGATGAACTTGCACCTGCCACAGTCCCTGGAGACGCGGGCTGAGATCCAGGAGCTCGCCATGGTGCCACGCATGATTGTCACCCCCCAGAGCAATCGCCCAGTTATGGGCATTGTGCAGGACACGCTGACCGCAGTGCGCAAATTCACCAAGAGGGACGTTTTCCTGGAGCGGGGGGAGGTGATGAACCTCCTGATGTTCCTGTCCACGTGGGACGGCAAGGTCCCACAGCCAGCCATCCTGAAGCCCCGGCCCCTGTGGACAGGGAAGCAGATCTTCTCCCTCATCATACCCGGCCACATCAACTGTATCCGCACCCACAGCACCCATCCCGACGATGAGGATAGTGGCCCTTACAAGCACATCTCTCCTGGGGACACCAAGGTGGTGGTGGAGAACGGGGAGCTGATCATGGGCATCCTGTGTAAGAAGTCTTTGGGCACATCGGCTGGCTCCCTGGTCCACATCTCTTACCTAGAGATGGGTCATGACATCACCCGCCTCTTCTACTCCAACATTCAGACTGTCATTAACAACTGGCTCCTCATTGAGGGTCATACCATTGGCATTGGGGACTCCATTGCTGATTCTAAGACTTACCAAGACATTCAGAACACTATTAAGAAGGCCAAGCAGGATGTAATAGAGGTCATCGAGAAGGCACATAACAACGAGCTGGAGCCCACCCCGGGGAACACTCTGCGGCAGACCTTTGAGAACCAGGTGAACCGCATTCTCAACGATGCCCGAGACAAGACTGGCTCCTCTGCCCAGAAATCCCTGTCTGAATACAACAACTTTAAGTCAATGGTTGTGTCCGGGGCTAAAGGTTCCAAGATCAACATCTCCCAGGTCATTGCTGTCGTCGGGCAGCAGAACGTGGAGGGCAAGCGGATCCCGTTTGGGTTCAAGCACCGGACTCTGCCTCACTTCATCAAAGATGACTATGGGCCTGAGAGCCGTGGCTTTGTGGAGAACTCCTACCTGGCCGGCCTCACACCCACTGAGTTCTTCTTCCATGCCATGGGGGGTCGTGAGGGGCTCATCGACACAGCTGTCAAGACTGCTGAGACTGGATACATCCAGCGGCGGCTGATCAAATCCATGGAGTCGGTGATGGTGAAGTATGATGCCACCGTGCGGAACTCCATCAATCAGGTGGTACAGCTGCGCTATGGCGAAGACGGCCTGGCGGGCGAGAGCGTTGAGTTCCAGAACCTGGCTACCCTCAAGCCTTCCAACAAGGCTTTCGAGAAGAAGTTCCGCTTTGATTATACCAATGAGAGGGCCCTGCGGCGCACCCTGCAGGAGGACGTGGTGAAGGACGTGCTGAGCAACGCACACATTCAGAACGAGCTGGAGCGAGAATTTGAGCGGATGCGTGAGGACCGGGAGGTGCTCAGGGTCATCTTCCCAACTGGTGACAGCAAGGTTGTCCTCCCCTGTAACCTGCTGCGCATGATCTGGAACGCTCAGAAGATCTTCCACATCAACCCTCGCCTCCCCTCTGACCTGCACCCCATCAAGGTGGTAGAGGGTGAGTACCTGCCTCAGGACCGCCAGGCCAGGCAGGCTCTGCTAGCAGCGTCCTGGTCTACAACCTCTTCATCCCCCGTTTGGCCCTTAGGTGTCAAGGAGCTGAGCAAGAAGCTGGTGATTGTGAATGGGGACGACCCACTGAGCCGGCAGGCCCAGGAGAACGCCACCCTGCTCTTCAACATCCACCTGCGGTCCACGCTGTGCTCCCGCCGCATGGCCGAGGAGTTTCGGCTCAGCGGAGAGGCCTTTGACTGGCTGCTCGGAGAGATCGAGTCCAAGTTCAACCAAGCCATTGCCCATCCCGGGGAAATGGTGGGAGCTCTGGCTGCACAGTCCCTTGGAGAACCTGCCACCCAGATGACCCTGAACACCTTCCACTATGCTGGTGTGTCCGCCAAGAATGTGACGCTGGGTGTGCCCCGACTTAAGGAGCTCATCAACATTTCCAAGAAGCCAAAGACCCCCTCACTTACTGTCTTCCTGCTGGGCCAGTCTGCTCGAGATGCTGAGAGAGCCAAGGTGCGGCTTAGGGATATTCTGTGCCGCCTGGAACATACAACGTTGAGGAAGGTGACTGCCAACACGGCCATCTACTATGACCCCAACCCGCAGAGCACGGTGGTGGCAGAGGATCAGGAGTGGGTGAATGTCTACTACGAGATGCCTGACTTTGATGTGGCCCGAATCTCCCCCTGGCTTTTGCGGGTGGAGCTGGACCGGAAGCACATGACTGATCGGAAGCTGACCATGGAGCAGATTGCCGAAAAGATCAACGCTGGTTTCGGTGATGACTTGAATTGCATCTTTAACGATGATAATGCAGAGAAGCTGGTGCTCCGTATCCGCATCATGAACAGTGATGAAAACAAGATGCAAGAGGAAGAAGAGGTGGTGGACAAGATGGATGACGACGTCTTCCTGCGCTGCATCGAGTCCAACATGCTGACAGATATGACCCTGCAGGGCATCGAGCAGATCAGCAAGGTGTACATGCACTTGCCGCAGACGGACAACAAGAAGAAGATCATCATCACAGAGGACGGGGAGTTCAAGGCCTTGCAGGAGTGGATCCTGGAGACGGATGGCGTGAGCCTCATGCGGGTGCTGAGCGAGAAGGACGTGGACCCTGTGCGCACCACGTCCAACGACATCGTGGAGATCTTCACGGTGCTGGGCATAGAAGCCGTGCGGAAGGCCCTGGAGCGGGAGCTATACCATGTCATCTCCTTCGATGGTTCCTACGTCAATTACCGGCACTTGGCTCTCCTGTGTGATACCATGACCTGTCGTGGCCACTTGATGGCCATCACCCGACACGGAGTCAACCGCCAGGATACCGGACCTCTCATGAAGTGCTCCTTTGAGGAAACGGTGGATGTGCTTATGGAAGCAGCTGCACATGGAGAGAGCGACCCCATGAAGGGGGTGTCTGAGAACATCATGCTGGGCCAGCTGGCTCCAGCCGGCACTGGCTGTTTTGACCTCCTGCTCGATGCAGAGAAGTGCAAGTATGGCATGGAGATCCCCACCAACATCCCCGGCTTGGGGGCTGCCGGACCCACCGGCATGTTCTTCGGCTCGGCCCCCAGTCCCATGGGAGGAATTTCTCCAGCCATGACACCCTGGAACCAGGGCGCAACCCCAGCCTACGGCGCCTGGTCCCCCAGTGTTGGGAGCGGGATGACCCCGGGGGCAGCAGGCTTCTCTCCCAGTGCTGCTTCAGATGCCAGTGGCTTCAGCCCTGGTTACTCCCCGGCCTGGTCTCCCACGCCGGGTTCCCCGGGCTCCCCTGGCCCCTCAAGCCCGTATATCCCCTCACCAGGGGGTGCCATGTCTCCCAGCTACTCCCCAACGTCGCCTGCCTACGAGCCCCGCTCCCCTGGGGGCTACACGCCCCAGAGTCCCTCTTACTCCCCCACTTCACCCTCCTACTCCCCTACGTCTCCATCCTATTCTCCAACCAGCCCCAACTACAGCCCCACGTCACCCAGCTACTCCCCGACCTCGCCCAGCTACTCCCCGACCTCGCCCAGCTACTCCCCGACCTCTCCCAGCTACTCCCCGACCTCTCCCAGCTACTCCCCCACCTCGCCCAGCTACTCGCCCACTTCCCCAAGCTACTCGCCCACATCACCTAGCTACTCGCCAACCTCTCCCAGCTACTCGCCCACCTCTCCCAGTTACTCGCCAACTTCACCCAGCTACTCGCCCACCTCACCCAGCTACTCGCCGACATCTCCAAGCTATTCGCCGACATCACCAAGCTACTCACCAACTTCCCCAAGTTACTCACCCACCAGCCCTAACTATTCTCCAACCAGTCCCAATTACACCCCGACGTCACCCAGCTATAGCCCAACATCCCCCAGCTACTCACCTACTAGTCCCAACTACACACCAACGAGCCCCAACTACAGCCCAACCTCTCCAAGCTAYTCTCCGACTTCACCCAGCTACTCCCCAACCTCACCAAGCTACTCCCCTTCGAGCCCACGATACACACCACAGTCTCCCACCTATACCCCGAGCTCACCCAGCTACAGCCCCAGCTCGCCCAGCTACAGCCCGACCTCGCCAAAGTACACCCCAACCAGTCCTTCCTACAGCCCCAGCTCACCGGAGTACACCCCGACCTCTCCCAAGTACTCACCTACCAGCCCGAAATATTCGCCCACCTCCCCCAAGTACTCTCCTACCAGCCCCACCTACTCGCCCACCACTCCAAAATACTCGCCGACATCTCCTACTTACTCACCAACCTCTCCGGTCTACACCCCAACCTCCCCCAAGTATTCACCCACTAGCCCCACCTACTCACCCACCTCCCCCAAGTACTCGCCCACCAGCCCCACCTACTCGCCCACTTCCCCCAAAGGCTCGACCTACTCGCCCACCTCCCCTGGCTACTCACCCACCAGCCCCACCTATAGCCTCACCAGCCCAGCCATCAGTCCCGATGACAGTGATGAGGAGAACTGA

Related Sequences

bmy_01742T0 Protein

Length: 2060 aa      View alignments
>bmy_01742T0
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSVSGRWALAWGRGCWGVGRGAAPTDPALLCPQNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKACNRPGPLLPEQEAFWTGGQLEWAVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDVVKDVLSNAHIQNELEREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGEYLPQDRQARQALLAASWSTTSSSPVWPLGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKVRLRDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN*