Sequence detailsbmy_01742 (Coding sequence)

Part of scaffold_43 (SequenceType object (1))

For more information consult the page for scaffold_43 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

POLR2AENSTTRG00000014273 (Bottlenosed dolphin)

Gene Details

polymerase (RNA) II (DNA directed) polypeptide A, 220kDa

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000013530, Bottlenosed dolphin)

Protein Percentage 98.62%
cDNA percentage 97.65%
Ka/Ks Ratio 0.07212 (Ka = 0.0049, Ks = 0.0684)

BT.64620ENSBTAG00000046765 (Cow)

Gene Details

DNA-directed RNA polymerase II subunit RPB1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000055142, Cow)

Protein Percentage 99.09%
cDNA percentage 93.48%
Ka/Ks Ratio 0.01928 (Ka = 0.0065, Ks = 0.3348)

Additional orthologs identified in other species via the OPTIC pipeline.

POLR2A (Human)   Polr2a (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 6180 bp    Location:2168713..2149246   Strand:-
Raw sequence 
>bmy_01742
ATGCATGGGGGTGGCCCCCCCTCCGGGGACAGCGCATGCCCGCTGCGCACCATCAAGAGAGTGCAGTTCGGAGTCCTCAGTCCGGATGAACTGAAACGAATGTCTGTGACAGAGGGCGGCATCAAATACCCAGAGACCACCGAGGGAGGCCGCCCCAAGCTTGGGGGACTGATGGATCCGAGGCAGGGGGTGATTGAGAGGACTGGCCGCTGCCAAACCTGTGCAGGAAACATGACAGAGTGTCCTGGCCACTTTGGCCACATTGAGCTGGCCAAACCTGTGTTCCATGTCGGCTTCCTGGTCAAGACAATGAAAGTTTTGCGCTGCGTCTGCTTCTTCTGCTCCAAGTTGCTTGTGGACTCTGTGAGTGGGAGATGGGCTCTGGCCTGGGGGCGGGGTTGCTGGGGGGTGGGCAGGGGAGCAGCCCCAACGGACCCCGCTCTGCTCTGTCCCCAGAACAACCCGAAGATCAAGGACATTTTGGCTAAGTCCAAGGGGCAGCCCAAGAAGCGGCTCACACACGTCTATGACCTCTGCAAGGGCAAAAACATCTGCGAGGGCGGGGAGGAGATGGACAACAAGTTCGGCGTGGAGCAGCCTGAGGGCGATGAGGATTTGACCAAAGAAAAGGGCCACGGCGGCTGTGGGCGGTACCAGCCCAGGATCCGGCGCTCCGGCCTGGAGCTGTATGCAGAGTGGAAGCACGTCAACGAGGACTCTCAGGAGAAGAAGATCCTGCTGAGTCCTGAGCGGGTGCACGAGATCTTCAAACGCATCTCAGATGAGGAGTGCTTCGTCCTGGGCATGGAGCCTCGCTACGCCCGGCCCGAGTGGATGATTGTCACTGTGCTGCCCGTGCCCCCGCTCTCTGTGCGGCCCGCCGTTGTGATGCAGGGCTCTGCCCGCAACCAGGATGACCTGACACACAAACTGGCCGACATCGTGAAGATCAACAATCAGCTTCGGCGCAATGAGCAGAATGGCGCGGCCGCCCATGTCATCGCTGAGGACGTGAAGCTCCTCCAGTTTCACGTGGCCACCATGGTGGACAACGAGCTGCCTGGCTTGCCTCGTGCCATGCAGAAGTCTGGGCGTCCCCTCAAGTCCCTGAAGCAGCGGTTGAAGGGCAAGGAAGGCCGTGTGCGCGGGAACCTGATGGGCAAGCGGGTGGACTTCTCGGCCCGCACTGTCATCACCCCCGACCCCAACCTCTCCATTGACCAGGTTGGCGTGCCTCGCTCCATTGCCGCCAACATGACCTTTGCGGAGATCGTCACCCCCTTCAACATTGACAGACTTCAGGAACTAGTGCGCAGGGGGAACAGCCAGTACCCAGGGGCCAAGTACATCATCCGGGACAACGGTGATCGCATTGACCTGCGTTTCCACCCCAAGCCCAGTGACCTTCACCTGCAGACTGGCTATAAGGCATGTAATAGGCCAGGGCCTCTCTTACCTGAGCAGGAAGCTTTCTGGACTGGGGGCCAGCTGGAGTGGGCCGTGGAACGGCACATGTGCGACGGCGACATTGTTATCTTCAACCGGCAGCCAACTTTGCACAAAATGTCCATGATGGGACATCGGGTTCGCATCCTGCCCTGGTCTACTTTTCGCTTGAATCTTAGTGTGACAACTCCATACAATGCCGATTTTGATGGGGATGAGATGAACTTGCACCTGCCACAGTCCCTGGAGACGCGGGCTGAGATCCAGGAGCTCGCCATGGTGCCACGCATGATTGTCACCCCCCAGAGCAATCGCCCAGTTATGGGCATTGTGCAGGACACGCTGACCGCAGTGCGCAAATTCACCAAGAGGGACGTTTTCCTGGAGCGGGGGGAGGTGATGAACCTCCTGATGTTCCTGTCCACGTGGGACGGCAAGGTCCCACAGCCAGCCATCCTGAAGCCCCGGCCCCTGTGGACAGGGAAGCAGATCTTCTCCCTCATCATACCCGGCCACATCAACTGTATCCGCACCCACAGCACCCATCCCGACGATGAGGATAGTGGCCCTTACAAGCACATCTCTCCTGGGGACACCAAGGTGGTGGTGGAGAACGGGGAGCTGATCATGGGCATCCTGTGTAAGAAGTCTTTGGGCACATCGGCTGGCTCCCTGGTCCACATCTCTTACCTAGAGATGGGTCATGACATCACCCGCCTCTTCTACTCCAACATTCAGACTGTCATTAACAACTGGCTCCTCATTGAGGGTCATACCATTGGCATTGGGGACTCCATTGCTGATTCTAAGACTTACCAAGACATTCAGAACACTATTAAGAAGGCCAAGCAGGATGTAATAGAGGTCATCGAGAAGGCACATAACAACGAGCTGGAGCCCACCCCGGGGAACACTCTGCGGCAGACCTTTGAGAACCAGGTGAACCGCATTCTCAACGATGCCCGAGACAAGACTGGCTCCTCTGCCCAGAAATCCCTGTCTGAATACAACAACTTTAAGTCAATGGTTGTGTCCGGGGCTAAAGGTTCCAAGATCAACATCTCCCAGGTCATTGCTGTCGTCGGGCAGCAGAACGTGGAGGGCAAGCGGATCCCGTTTGGGTTCAAGCACCGGACTCTGCCTCACTTCATCAAAGATGACTATGGGCCTGAGAGCCGTGGCTTTGTGGAGAACTCCTACCTGGCCGGCCTCACACCCACTGAGTTCTTCTTCCATGCCATGGGGGGTCGTGAGGGGCTCATCGACACAGCTGTCAAGACTGCTGAGACTGGATACATCCAGCGGCGGCTGATCAAATCCATGGAGTCGGTGATGGTGAAGTATGATGCCACCGTGCGGAACTCCATCAATCAGGTGGTACAGCTGCGCTATGGCGAAGACGGCCTGGCGGGCGAGAGCGTTGAGTTCCAGAACCTGGCTACCCTCAAGCCTTCCAACAAGGCTTTCGAGAAGAAGTTCCGCTTTGATTATACCAATGAGAGGGCCCTGCGGCGCACCCTGCAGGAGGACGTGGTGAAGGACGTGCTGAGCAACGCACACATTCAGAACGAGCTGGAGCGAGAATTTGAGCGGATGCGTGAGGACCGGGAGGTGCTCAGGGTCATCTTCCCAACTGGTGACAGCAAGGTTGTCCTCCCCTGTAACCTGCTGCGCATGATCTGGAACGCTCAGAAGATCTTCCACATCAACCCTCGCCTCCCCTCTGACCTGCACCCCATCAAGGTGGTAGAGGGTGAGTACCTGCCTCAGGACCGCCAGGCCAGGCAGGCTCTGCTAGCAGCGTCCTGGTCTACAACCTCTTCATCCCCCGTTTGGCCCTTAGGTGTCAAGGAGCTGAGCAAGAAGCTGGTGATTGTGAATGGGGACGACCCACTGAGCCGGCAGGCCCAGGAGAACGCCACCCTGCTCTTCAACATCCACCTGCGGTCCACGCTGTGCTCCCGCCGCATGGCCGAGGAGTTTCGGCTCAGCGGAGAGGCCTTTGACTGGCTGCTCGGAGAGATCGAGTCCAAGTTCAACCAAGCCATTGCCCATCCCGGGGAAATGGTGGGAGCTCTGGCTGCACAGTCCCTTGGAGAACCTGCCACCCAGATGACCCTGAACACCTTCCACTATGCTGGTGTGTCCGCCAAGAATGTGACGCTGGGTGTGCCCCGACTTAAGGAGCTCATCAACATTTCCAAGAAGCCAAAGACCCCCTCACTTACTGTCTTCCTGCTGGGCCAGTCTGCTCGAGATGCTGAGAGAGCCAAGGTGCGGCTTAGGGATATTCTGTGCCGCCTGGAACATACAACGTTGAGGAAGGTGACTGCCAACACGGCCATCTACTATGACCCCAACCCGCAGAGCACGGTGGTGGCAGAGGATCAGGAGTGGGTGAATGTCTACTACGAGATGCCTGACTTTGATGTGGCCCGAATCTCCCCCTGGCTTTTGCGGGTGGAGCTGGACCGGAAGCACATGACTGATCGGAAGCTGACCATGGAGCAGATTGCCGAAAAGATCAACGCTGGTTTCGGTGATGACTTGAATTGCATCTTTAACGATGATAATGCAGAGAAGCTGGTGCTCCGTATCCGCATCATGAACAGTGATGAAAACAAGATGCAAGAGGAAGAAGAGGTGGTGGACAAGATGGATGACGACGTCTTCCTGCGCTGCATCGAGTCCAACATGCTGACAGATATGACCCTGCAGGGCATCGAGCAGATCAGCAAGGTGTACATGCACTTGCCGCAGACGGACAACAAGAAGAAGATCATCATCACAGAGGACGGGGAGTTCAAGGCCTTGCAGGAGTGGATCCTGGAGACGGATGGCGTGAGCCTCATGCGGGTGCTGAGCGAGAAGGACGTGGACCCTGTGCGCACCACGTCCAACGACATCGTGGAGATCTTCACGGTGCTGGGCATAGAAGCCGTGCGGAAGGCCCTGGAGCGGGAGCTATACCATGTCATCTCCTTCGATGGTTCCTACGTCAATTACCGGCACTTGGCTCTCCTGTGTGATACCATGACCTGTCGTGGCCACTTGATGGCCATCACCCGACACGGAGTCAACCGCCAGGATACCGGACCTCTCATGAAGTGCTCCTTTGAGGAAACGGTGGATGTGCTTATGGAAGCAGCTGCACATGGAGAGAGCGACCCCATGAAGGGGGTGTCTGAGAACATCATGCTGGGCCAGCTGGCTCCAGCCGGCACTGGCTGTTTTGACCTCCTGCTCGATGCAGAGAAGTGCAAGTATGGCATGGAGATCCCCACCAACATCCCCGGCTTGGGGGCTGCCGGACCCACCGGCATGTTCTTCGGCTCGGCCCCCAGTCCCATGGGAGGAATTTCTCCAGCCATGACACCCTGGAACCAGGGCGCAACCCCAGCCTACGGCGCCTGGTCCCCCAGTGTTGGGAGCGGGATGACCCCGGGGGCAGCAGGCTTCTCTCCCAGTGCTGCTTCAGATGCCAGTGGCTTCAGCCCTGGTTACTCCCCGGCCTGGTCTCCCACGCCGGGTTCCCCGGGCTCCCCTGGCCCCTCAAGCCCGTATATCCCCTCACCAGGGGGTGCCATGTCTCCCAGCTACTCCCCAACGTCGCCTGCCTACGAGCCCCGCTCCCCTGGGGGCTACACGCCCCAGAGTCCCTCTTACTCCCCCACTTCACCCTCCTACTCCCCTACGTCTCCATCCTATTCTCCAACCAGCCCCAACTACAGCCCCACGTCACCCAGCTACTCCCCGACCTCGCCCAGCTACTCCCCGACCTCGCCCAGCTACTCCCCGACCTCTCCCAGCTACTCCCCGACCTCTCCCAGCTACTCCCCCACCTCGCCCAGCTACTCGCCCACTTCCCCAAGCTACTCGCCCACATCACCTAGCTACTCGCCAACCTCTCCCAGCTACTCGCCCACCTCTCCCAGTTACTCGCCAACTTCACCCAGCTACTCGCCCACCTCACCCAGCTACTCGCCGACATCTCCAAGCTATTCGCCGACATCACCAAGCTACTCACCAACTTCCCCAAGTTACTCACCCACCAGCCCTAACTATTCTCCAACCAGTCCCAATTACACCCCGACGTCACCCAGCTATAGCCCAACATCCCCCAGCTACTCACCTACTAGTCCCAACTACACACCAACGAGCCCCAACTACAGCCCAACCTCTCCAAGCTAYTCTCCGACTTCACCCAGCTACTCCCCAACCTCACCAAGCTACTCCCCTTCGAGCCCACGATACACACCACAGTCTCCCACCTATACCCCGAGCTCACCCAGCTACAGCCCCAGCTCGCCCAGCTACAGCCCGACCTCGCCAAAGTACACCCCAACCAGTCCTTCCTACAGCCCCAGCTCACCGGAGTACACCCCGACCTCTCCCAAGTACTCACCTACCAGCCCGAAATATTCGCCCACCTCCCCCAAGTACTCTCCTACCAGCCCCACCTACTCGCCCACCACTCCAAAATACTCGCCGACATCTCCTACTTACTCACCAACCTCTCCGGTCTACACCCCAACCTCCCCCAAGTATTCACCCACTAGCCCCACCTACTCACCCACCTCCCCCAAGTACTCGCCCACCAGCCCCACCTACTCGCCCACTTCCCCCAAAGGCTCGACCTACTCGCCCACCTCCCCTGGCTACTCACCCACCAGCCCCACCTATAGCCTCACCAGCCCAGCCATCAGTCCCGATGACAGTGATGAGGAGAACTGA

Related Sequences

bmy_01742T0 SequenceType object (3)

Length: 2060 aa      View alignments
>bmy_01742T0
MHGGGPPSGDSACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGRCQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSVSGRWALAWGRGCWGVGRGAAPTDPALLCPQNNPKIKDILAKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPRIRRSGLELYAEWKHVNEDSQEKKILLSPERVHEIFKRISDEECFVLGMEPRYARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAHVIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDFSARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYPGAKYIIRDNGDRIDLRFHPKPSDLHLQTGYKACNRPGPLLPEQEAFWTGGQLEWAVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILPWSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIVQDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPGHINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYLEMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIEKAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSKINISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFFHAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAGESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDVVKDVLSNAHIQNELEREFERMREDREVLRVIFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGEYLPQDRQARQALLAASWSTTSSSPVWPLGVKELSKKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFNQAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTPSLTVFLLGQSARDAERAKVRLRDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYYEMPDFDVARISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKLVLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTDNKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVRKALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEETVDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGMEIPTNIPGLGAAGPTGMFFGSAPSPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAASDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPNYSPTSPNYTPTSPSYSPTSPSYSPTSPNYTPTSPNYSPTSPSYSPTSPSYSPTSPSYSPSSPRYTPQSPTYTPSSPSYSPSSPSYSPTSPKYTPTSPSYSPSSPEYTPTSPKYSPTSPKYSPTSPKYSPTSPTYSPTTPKYSPTSPTYSPTSPVYTPTSPKYSPTSPTYSPTSPKYSPTSPTYSPTSPKGSTYSPTSPGYSPTSPTYSLTSPAISPDDSDEEN*