Sequence detailsbmy_01815 (Coding sequence)

Part of scaffold_44 (SequenceType object (1))

For more information consult the page for scaffold_44 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

COL15A1ENSTTRG00000013637 (Bottlenosed dolphin)

Gene Details

collagen, type XV, alpha 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000012952, Bottlenosed dolphin)

Protein Percentage 90.8%
cDNA percentage 92.4%
Ka/Ks Ratio 0.549 (Ka = 0.0366, Ks = 0.0667)

COL15A1ENSBTAG00000010082 (Cow)

Gene Details

collagen alpha-1(XV) chain precursor

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000013292, Cow)

Protein Percentage 88.04%
cDNA percentage 90.32%
Ka/Ks Ratio 0.38289 (Ka = 0.0715, Ks = 0.1868)

COL15A1 (Minke Whale)

Gene Details

collagen, type XV, alpha 1

External Links

Gene match (Identifier: BACU017573, Minke Whale)

Protein Percentage 95.36%
cDNA percentage 96.64%
Ka/Ks Ratio 0.65112 (Ka = 0.0296, Ks = 0.0454)

Additional orthologs identified in other species via the OPTIC pipeline.

COL15A1 (Human)   Col15a1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 3165 bp    Location:1113534..1178524   Strand:+
Raw sequence 
>bmy_01815
TGGCCTCCTCTCTCCCTCCCTGCAGAACTGGCTTCCCAGGGCCACCTGGACCTCACAGAGCTCATCGGCGTCCCACTGCCCTCGTCCGTGTCCTTTGTCACTGGCTATGGTGGCTTCCCAGCCTACAGTTTCGGGCCTGGTGCCAACGTCGGCCGCCCGGCCAGGACCCTCATCCCACCCACCTTCTTCAGGGACTTTGCCATCAGCGTGATGGCGAAGCCCAGCAGTGCCCGAGGCGGCGTGCTCTTTGCTATCACAGATGCCTTCCAGAAGGTCATCTACCTGGGCCTGCGGCTCTCAGGAGTGGAGGACGGCAGCCAGCGGGTCATCCTCTACTATACGGAGCCCGGCTCCAAGGTGTCCCGTGAGGCGGCCGCCTTCCTGGTGCCCGTGATGACCCACAGGTGGAACCGCTTTGCCATGGTTGTCCAGGGCGAGGAAGTGACCCTCCTTGTGGACTGCGAGGAGCACAGCCACGTCCCCTTCCCGAGGTCCTCCCGGGCCTTGGCCTTCGAGCCCAGCGCGGGAATCTTCATCGGCAACGCAGGAGCCACGGGGCTGGAGAGATTCACTGGGTCTATACAGCAGCTCACCGTCCACCCTGACCCCAGGACTCCCGAGGAGCTGTGTGAAGCTGAAGAATCCTCGGCATCAGGAGAGACCAGCGGGCTTCAGGAGACAGAGAGAGTAGCTGAGATCTTGGAAGCCATCACCTACACTCAAGCCCCGTTATTAAGTGCAGAATGCCTGCTTCCTGTAGGGTCTGGTGAGATCCTGAATGACACACTGGAGACAGTTGATACTGTGGACGGTTCCCCCGTTACTGACACTGGCTCGGGGGATGGGGCCTTCCTTCATGTCATTGAAGAGGGTCCAATCAGTGAAGAAAGCTTAACAATAGCAGCGGCTGCAGCAAAAGTGCCCCTCAGCACTTTTGAGGAAGAGGAGGCCAGCGGGTTCCYGACTGATGGCCTGGTTCCCCTCACACCCACAGCGGCCCCCAARCAAGTAGTCACTTCTAGATGTTGTGGGCTGATTATCCTTGATGTTCCTCAGGGCCCTGAGGGAAAGCCTGGACTTGATGGAGCCTCCGGCCTTCCTGGAATGAAAGGGGAGAAGGGAGCAAGAGGACCTAATGGCTCAGTTGGTGAAAAGGGTGATCCCGGCAACAGAGGCTTACCAGGACCCCCAGGGAAAAATGGACAAGTTGGCGCTCCTGGGGTCATGGGACCCCCAGGGCCCCCTGGACCCCCTGGGCCCCAAGGCCCTGGATGTGCAATGGGACTTGGATTTGAGGGTCCCAAAGGAGAAAAAGGAGACCAGGGACCCAAGGGTGAAAGAGGGATGGATGGAGCCAGCGTTGTGGGACCCCCTGGGCCCAGGGGGCTACCAGGGCGCATCGAGGTCTTATCTAGTCCTTTGATCAACATCACCCATGGATTCATGAATCTCTCGGACATTCCTGAGCTCGTCGGGCCTCCGGTGTGTATCCACAGCTGCCCTAGAGGACCCAGAGGACCAAAAGGTGACACTGGTGTGCCTGGATTTCCAGGACTAAAAGGAGAACAGGGTGAGAAGGGAGAGCCAGGCGCCATCCTGACGGGGGATATTCCTCTGGAAAGGCTGAGGAGCCAAAAGGGTGAACCTGGAGAGCGTGGAGCCCCGGGACCAATGGGTCGCCCAGGACTGAATGGCCTCAAAGGCACCAAAGGAGATCGAGCGGTCATGATGCCGGGCCCACCTGGCCTACCTGGTCCTCCAGGCCCCCCAGGACCACCTGGAGCTGTGATTAAGATCAAAGGAGTAAGTTGGCAGTGGGGAGGTGGGGGAGACCTGAAGGAGGAGTGGGGAATGGCCCCAGACCAGCCTAAGCTGGAGTCGGGTGTCCTGATTCCCTCCTCTCATTCTCACTTCCCACAGGCCGTCTTCCCAGTTCCAGTCCGGCCACACTGCAAAACGCCAGTTGGTACCACATATCCTGGAAATTCAGAACTCATCACTTTTCATGGTGTTAAAGGAGAGAAAGGATCCTGGGGTCTTCCCGGCTCAAAAGGAGAAAAAGGCGACCAGGGGGCCCAGGGACCACCAGGCCCTCCTGTGGATCCAACTTACCTGAGACATTTTCTGAACAGCTTGAAGGGGGAGAACAGAGACAGGGGGATCAAAGGAGAAAAAGGAGACTCTGACAGCGGCTTCTCTGAGTCAGGGCCCCCGGGCCTGCCGGGAAGTCCAGGCCTGGCGGGCCAGAAAGGGGAGACCATCGTCGGGCCCCAGGGACCCCCAGGTGTTCCTGGCCTGCCTGGGCCACCTGGCTTTGGGAGACCTGGTTCCCCTGGGCCACCGGGACCCCCGGGGCCACCAGGACCTCCGGCTATCCTAGGAGCAGGTCAGTACTCTGTGGCCATTCCAGGCCCACCCGGCCCTCCAGGACAGCCAGGGCTCCCCGGATCCAGGAACCTGGTTACAGCATTTAGCAACATGGCTGACATGTTGCAGAAAGCCCATTTGGTCATAGAAGGGACATTCATCTACCTGAGGGACAGCACCGAGTTTTTCATTCGTGTCAGAGATGGTTGGAAAAAATTGCAGCTGGGAGAACTGATCCCCATTCCGGATGACAGCCCACCACCCCCTGCGCTTTCCAGCAATCTACACTTGGTCGCTCTGAACACGCCATTTTCTGGGGACATTCGAGCTGATTTTCAGTGCTTCCAGCAGGCCAGGGCAGCAGGACTGTTGTCCACCTACGAAGCATTCTTATCCTCCCACTTGCAAGATCTCTCTACAGTTGTGAGGAAAGAAGAGAGATATAGCCTTCCAATAGTGAACCTTAAGGGCCAAGTACTTTTTAATAATTGGGACTCAATTTTTTCTGGCCATGGAGGTCAGTTCAATACACATGTTCCAATATATTCCTTTGATGGCCGAGATGTAATGACAGATCCTTCTTGGCCCCAGAAGGTCGTTTGGCACGGCTCCAGCACCCACGGAGTCCGTCTTGTGGATCAGTACTGTGAAGCGTGGCGAACCGCCGACATGGCAGTCATGGGCTTGGCCTCCCCGCTGAGCACGGGGAAGATTCTGGACCAGAAAGCATACAGCTGTGCTAATAGGCTAATTGTTCTGTGTATCGAAAACAGTTTCATGACAGATGTGAGGAAGTAA

Related Sequences

bmy_01815T0 SequenceType object (3)

Length: 1055 aa      View alignments
>bmy_01815T0
WPPLSLPAELASQGHLDLTELIGVPLPSSVSFVTGYGGFPAYSFGPGANVGRPARTLIPPTFFRDFAISVMAKPSSARGGVLFAITDAFQKVIYLGLRLSGVEDGSQRVILYYTEPGSKVSREAAAFLVPVMTHRWNRFAMVVQGEEVTLLVDCEEHSHVPFPRSSRALAFEPSAGIFIGNAGATGLERFTGSIQQLTVHPDPRTPEELCEAEESSASGETSGLQETERVAEILEAITYTQAPLLSAECLLPVGSGEILNDTLETVDTVDGSPVTDTGSGDGAFLHVIEEGPISEESLTIAAAAAKVPLSTFEEEEASGFXTDGLVPLTPTAAPKQVVTSRCCGLIILDVPQGPEGKPGLDGASGLPGMKGEKGARGPNGSVGEKGDPGNRGLPGPPGKNGQVGAPGVMGPPGPPGPPGPQGPGCAMGLGFEGPKGEKGDQGPKGERGMDGASVVGPPGPRGLPGRIEVLSSPLINITHGFMNLSDIPELVGPPVCIHSCPRGPRGPKGDTGVPGFPGLKGEQGEKGEPGAILTGDIPLERLRSQKGEPGERGAPGPMGRPGLNGLKGTKGDRAVMMPGPPGLPGPPGPPGPPGAVIKIKGVSWQWGGGGDLKEEWGMAPDQPKLESGVLIPSSHSHFPQAVFPVPVRPHCKTPVGTTYPGNSELITFHGVKGEKGSWGLPGSKGEKGDQGAQGPPGPPVDPTYLRHFLNSLKGENRDRGIKGEKGDSDSGFSESGPPGLPGSPGLAGQKGETIVGPQGPPGVPGLPGPPGFGRPGSPGPPGPPGPPGPPAILGAGQYSVAIPGPPGPPGQPGLPGSRNLVTAFSNMADMLQKAHLVIEGTFIYLRDSTEFFIRVRDGWKKLQLGELIPIPDDSPPPPALSSNLHLVALNTPFSGDIRADFQCFQQARAAGLLSTYEAFLSSHLQDLSTVVRKEERYSLPIVNLKGQVLFNNWDSIFSGHGGQFNTHVPIYSFDGRDVMTDPSWPQKVVWHGSSTHGVRLVDQYCEAWRTADMAVMGLASPLSTGKILDQKAYSCANRLIVLCIENSFMTDVRK*