Part of scaffold_47 (Scaffold)

For more information consult the page for scaffold_47 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SNRNP25 ENSTTRG00000012049 (Bottlenosed dolphin)

Gene Details

small nuclear ribonucleoprotein 25kDa (U11/U12)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011427, Bottlenosed dolphin)

Protein Percentage 93.19%
cDNA percentage 94.42%
Ka/Ks Ratio 0.41234 (Ka = 0.0455, Ks = 0.1104)

SNRNP25 ENSBTAG00000019804 (Cow)

Gene Details

U11/U12 small nuclear ribonucleoprotein 25 kDa protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000026387, Cow)

Protein Percentage 97.56%
cDNA percentage 94.31%
Ka/Ks Ratio 0.0578 (Ka = 0.0119, Ks = 0.2061)

SNRNP25  (Minke Whale)

Gene Details

small nuclear ribonucleoprotein 25kDa (U11/U12)

External Links

Gene match (Identifier: BACU009272, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.46%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0162)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 600 bp    Location:1038637..1041509   Strand:+
>bmy_01851
AGCCCCGCCCCTCGACGCCCCGAAGGAGAGGCTGCGGTGGCGGTCCCCGCGCGTGCGCGCCGCACCACGGTCGCGCGGAGCGACCGTGCGGGCGGAGCCCGCGGGAGGCTAGGCAGCCTGGAGGAGGCGGGGGCCGCGGCGCGGCGGGAGCCGCCGGAGGACGAGGAGGACGAGGAGGAGGCGCTGCCGCACTCCGAGGCGGTGGATGTGTTCCAGGAGGGTCTGGCCATGGTGGTACAGGACCCGCTGCTCTGCGACCTTCCGATCCAGGTTACTTTGGAAGAGGTCAATTCCCAAATAGCACTAGAATACGGCCAAGCAATGACAGTCCGAGTGTGCAAGATGGATGGAGAAGTTATGCCTGTGGTTGTAGTCCAGAACGCCACGGTCCTGGACCTGAAGAAGGCCATCCAGAGATACGTGCAGCTCAGGCAGGAGCGCGAAGGGGGCATTCAGCACATCAGCTGGTCCTATGTGTGGAGGACGTACCACCTGACCTCTGCAGGAGAGAAGCTCGCAGAAGACCAGAAGAAGCTCCGAGATTATGGTATCCGGAATCGGGATGAGGTGTCCTTCCTCAAAAAGCTGAGACAAAAGTGA

Related Sequences

bmy_01851T0 Protein

Length: 200 aa      View alignments
>bmy_01851T0
SPAPRRPEGEAAVAVPARARRTTVARSDRAGGARGRLGSLEEAGAAARREPPEDEEDEEEALPHSEAVDVFQEGLAMVVQDPLLCDLPIQVTLEEVNSQIALEYGQAMTVRVCKMDGEVMPVVVVQNATVLDLKKAIQRYVQLRQEREGGIQHISWSYVWRTYHLTSAGEKLAEDQKKLRDYGIRNRDEVSFLKKLRQK*