Sequence details bmy_01852 (Coding sequence)

Part of scaffold_47 (Scaffold)

For more information consult the page for scaffold_47 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RHBDF1 ENSTTRG00000012062 (Bottlenosed dolphin)

Gene Details

rhomboid 5 homolog 1 (Drosophila)

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011437, Bottlenosed dolphin)

Protein Percentage 93.21%
cDNA percentage 94.29%
Ka/Ks Ratio 0.26513 (Ka = 0.0421, Ks = 0.1587)

RHBDF1 ENSBTAG00000019805 (Cow)

Gene Details

Inactive rhomboid protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000026388, Cow)

Protein Percentage 91.55%
cDNA percentage 90.79%
Ka/Ks Ratio 0.12347 (Ka = 0.0497, Ks = 0.4026)

RHBDF1  (Minke Whale)

Gene Details

rhomboid 5 homolog 1 (Drosophila)

External Links

Gene match (Identifier: BACU009271, Minke Whale)

Protein Percentage 99.88%
cDNA percentage 99.39%
Ka/Ks Ratio 0.0166 (Ka = 0.0005, Ks = 0.0306)

Additional orthologs identified in other species via the OPTIC pipeline.

RHBDF1 (Human)   Rhbdf1 (Mouse)  

Genome Location

Sequence Coding sequence

Length: 2832 bp    Location:1049477..1042368   Strand:-
Raw sequence 
>bmy_01852
ATGCCGGCCGAGCCCGCCCGCGTCCCCTCACCCCACCAGGAGCCCCGGCGGCCGGGGCTGCAGCGCCAGATGTCCATCACACAGACCATCCGCAGCCGACAGGTGCGCTTTGGGCGTGTCCACACTCTGCCCCTGTTGGGCCCCCCTGCTGCCCGCAGGGCCCTCACACAGCGCTCGTCTCTCTCTCGGTCCCTGCTCAGGGGCACTGCTGACTGGTTTGGAGTGAGCAAGGACAGTGACAGCACCCAGAAGTGGCAGCGCAAGAGCATCCGTCACTGCAGCCAGCGCTACGGGAAGCTGAAGCCCCAGGTCATCCGGGAGCTAGACCTGCCCAGCCAGGACAATGTGTCGCTGACCAGCACTGAGACGCCCCCTCCTCTGTATGTGGGGCCATGCCAGCTGGGCATGCAGAAGATCATAGACCCCCTGGCCCGGGGCCGGGCCTTCCGCTTGGCGGATGATGCCGCCGACGGCCTGAGTGCCCCGCACACGCCGGTCACGCCGGGTGCCGCCTCCCTCTGCTCCTTCTCCAGCTCCCGTTCGGGTTTCAACCGGCTCCCGCGGCGGCGCAAGCGCGAGTCGGTGGCCAAGATGAGCTTCCGGGCAGCCGCTGCGCTGGTGAAGGGCCGCTCGGTTAGGGATGGCACACTGCGCCGGCTCCAGCGCCGAAGCTTCACTCCTGCCAGCTTCCTGGAGGAGGACACGGCTGACTTCCCCGACGAGCTGGACACATCCTTCTTTGCCCGGGAAGGTGTCCTCCACGAGGAGCTGTCCACGTACCCAGATGAGGTGTTCGAGTCCCCATCGGAGGCAGCGCTCAAGGACTGGGAGAGGGCCCCGGAGCAGGCGGACCTCACGGGTGGGGCCCTGGCCCGCAGCGAGCTGGAGCGCAGCCACCTGATGTTGCCCCTGGAACGTGGCTGGCGCAAGCAGAAGGAGGGCGGTGCAGCGGCCCCGCAGCCCAAGGTGCGGCTGCGGCAGGAGGTGGTGAGCGCCGCGGGTCAGCGGCGGGGCCAGCGCATCGCGATGCCGGTGCGCAAGTTCTTCGCCAGGGAGAAGCGGCCGTATGGGCTGGGCATGGTGGGCCGGCTAACCAACCGCACTTACCGCAAGCGAATCGACAGCTATGTCAAACGCCAGATTGAGGACATGGATGACCACAGGCCCTTCTTCACCTACTGGCTCACCTTCGTGCACTCGCTCGTCACCATTCTAGCCGTGTGCATCTATGGCGTGGCGCCCGTAGGCTTCTCACAGCACGAGACCGTAGACTCGGTGCTGCGCAACCGAGGGGTCTATGAGAATGTCAAGTACGTTCAGCAGGAGAACTTCTGGATCGGGCCCAGCTCGGAGGCTCTCATTCACCTGGGTGCCAAGTTCTCGCCCTGCATGCGCCAGGATCCGCAGGTGCATAGTTTCATCCACGCTGCGCGTGAGCGTGAGAAGCACTCGGCCTGCTGTGTGCGTAACGACCGGTCTGGCTGCGTGCAGACCTCGGAAGAGGAGTGCTCGTCCACGCTGGCAGTGTGGGTGAAGTGGCCCTTCCATCCCAGCGCCCCAGACCTTGCTGGCCACAAGAGGCAGTTTGGCTCTGTCTGCCACCAGGACCCCAGGGTGTGCGATGAGCCTTCCTCCGAGGACCCCCATGAGTGGCCAGATGACATCACCAAGTGGCCGATCTGCACCAAAAACAGCGCTGGGAACCACACCAACCACCCGCACATGGACTGTGTCATCACAGGCCGGCCCTGCTGCATTGGCACCAAGGGCAGGTGTGAGATCACCTCCCGGGAGTACTGTGACTTCATGAGGGGCTACTTCCACGAGGAGGCCACACTCTGCTCTCAGGTAGGCCTCCGGGGTGAGGGTCCCTCCCCGTCCCCGCAGCCACGGCGGGTGCTGACAGGCCACTCTGCACAGGTGCACTGCATGGACGATGTGTGTGGGCTCTTGCCCTTCCTCAACCCCGAGGTGCCCGACCAGTTCTACCGCCTGTGGCTGTCCCTATTCTTGCACGCTGGGCAAGTGACACCATGTGGGCTGAGCGGGGTTGGGATCCTGCACTGCCTGGTGTCTGTCTGCTTCCAGATGACTGTCCTGCGGGACCTGGAGAAGCTGGCAGGCTGGCACCGCATAGCCATCATCTACCTGCTGAGTGGCGTCACTGGTAACCTGGCCAGTGCCATTTTCCTGCCATACCGGGCAGAGGTAAGGCTGCCCCCCAAGGTGGGGCCCTCCTACGTGCACCTGCTGCCCAGCACGAACTGGTTCCAGCACAGAGTCGAGTTGCTACAGTGCCCCGCCCGGGAGCAGCTCCACTTGGCTCCTGTCCCGATTCGCTCTGGGCGGAGGGAGGTGGGACGGGGCGACCTGCTCAGGCCCACCAGCTCACGGGCACCCACACGCCCCCAGGTGGGCCCCGCCGGCTCGCAGTTCGGCATCCTGGCCTGCCTCTTCGTGGAGCTCTTCCAGAGCTGGCAGATCCTGGCACGGCCCTGGCGTGCCTTCTTCAAGCTGCTGGCTGTGGTGCTCTTCCTCTTCACCTTCGGGCTGCTGCCCTGGATCGACAACTTCGCCCACATCTCGGGCTTCGTCAGCGGCCTCTTCCTCTCCTTTGCCTTCTTGCCCTACATCAGCTTTGGCAAGTTTGACCTGTACCGCAAGCGCTGCCAGATCATCATCTTTCAGGTGGTCTTCCTGGGCCTCCTGGCTGGCCTGGTGGTCCTCTTCTACTTCTACCCTGTGCGCTGTGAGTGGTGCGAGTTCCTCACCTGCATCCCCTTCACTGACAAGTTCTGTGAGAAGTACGAGCTGGACGCTCAGCTCCACTGA

Related Sequences

bmy_01852T0 Protein

Length: 944 aa      View alignments
>bmy_01852T0
MPAEPARVPSPHQEPRRPGLQRQMSITQTIRSRQVRFGRVHTLPLLGPPAARRALTQRSSLSRSLLRGTADWFGVSKDSDSTQKWQRKSIRHCSQRYGKLKPQVIRELDLPSQDNVSLTSTETPPPLYVGPCQLGMQKIIDPLARGRAFRLADDAADGLSAPHTPVTPGAASLCSFSSSRSGFNRLPRRRKRESVAKMSFRAAAALVKGRSVRDGTLRRLQRRSFTPASFLEEDTADFPDELDTSFFAREGVLHEELSTYPDEVFESPSEAALKDWERAPEQADLTGGALARSELERSHLMLPLERGWRKQKEGGAAAPQPKVRLRQEVVSAAGQRRGQRIAMPVRKFFAREKRPYGLGMVGRLTNRTYRKRIDSYVKRQIEDMDDHRPFFTYWLTFVHSLVTILAVCIYGVAPVGFSQHETVDSVLRNRGVYENVKYVQQENFWIGPSSEALIHLGAKFSPCMRQDPQVHSFIHAAREREKHSACCVRNDRSGCVQTSEEECSSTLAVWVKWPFHPSAPDLAGHKRQFGSVCHQDPRVCDEPSSEDPHEWPDDITKWPICTKNSAGNHTNHPHMDCVITGRPCCIGTKGRCEITSREYCDFMRGYFHEEATLCSQVGLRGEGPSPSPQPRRVLTGHSAQVHCMDDVCGLLPFLNPEVPDQFYRLWLSLFLHAGQVTPCGLSGVGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFLPYRAEVRLPPKVGPSYVHLLPSTNWFQHRVELLQCPAREQLHLAPVPIRSGRREVGRGDLLRPTSSRAPTRPQVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFAHISGFVSGLFLSFAFLPYISFGKFDLYRKRCQIIIFQVVFLGLLAGLVVLFYFYPVRCEWCEFLTCIPFTDKFCEKYELDAQLH*