Part of scaffold_47 (SequenceType object (1))

For more information consult the page for scaffold_47 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RPUSD1ENSBTAG00000000179 (Cow)

Gene Details

RNA pseudouridylate synthase domain-containing protein 1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000000204, Cow)

Protein Percentage 93.18%
cDNA percentage 92.21%
Ka/Ks Ratio 0.0857 (Ka = 0.0302, Ks = 0.3522)

RPUSD1 (Minke Whale)

Gene Details

RNA pseudouridylate synthase domain containing 1

External Links

Gene match (Identifier: BACU009242, Minke Whale)

Protein Percentage 98.4%
cDNA percentage 98.4%
Ka/Ks Ratio 0.11658 (Ka = 0.0068, Ks = 0.0579)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence SequenceType object (2)

Length: 939 bp    Location:1662352..1660630   Strand:-
>bmy_01895
ATGGAGCCAGGCAGCGTGGAGAACCTGTGTGTCGTGTACCGGAGCCGTGACTTCCTGGTGGTGAACAAGCACTGGGATGTGCGCATCGACAGCAAGGCCTGGTGGGAGACGCTGACCCTCCAGAAGCAGCTGCAGCACCGCTTCCCAGAGCTGGCCGACCCTGACACCTGCTACGGGTTCAGGTTCTGCCACCAACTGGACTTCTCCACCAGCGGGGCACTCTGTGTGGCCCTGAACAAGGCAGCCGCAGGCAGTGCCTACAGGTGCTTCAAGGACCGGAAAGTCACCAAGGCTTATCTGGCTTTGGTGCGGGGGCACGTCCAGGAGAGCCGAATGACCATCAGCTATGCTATTGGCAAGAACAGCACAGAAGGCCGGACCCACACCATGTGCATTGAGGGCACACAGGGCTGTGAGAACCCAAAACCAAGCCTCACTGAGCTGATGGTCCTGGAACACGGACTGTATGCAGGTGATCCTGTCTCCAAAGTGCTGTTGCAGCCTCTCACGGGACGGACGCACCAGCTGCGCGTGCACTGCAGCTCCCTGGGCCACCCCATCGTGGGGGACCAGACCTATGGCCAGGCCTCGAGCCAGGAGGACCAGCCCTTCCGCATGATGCTCCACGCCTTCTACCTGCGCATCCCCACGTGCACCGAGTGCGTGGAGGCCTGCACGCCCGACCCCTTCGTGCCCACCCTAGATGCCTGCTGGAGTCCCCACACCCTGGTGCAGCCACTGGACGAGCTCGTCCAAGTCCTGCGGGCTGCCCCAGACCCTGACCCCACAGAAGGGGGCCCCAGGCCCTGCAGCCCCTCCATGCCCCTGCCCGGGCCGGGCCGGCCCCCACCGCCCCCTGCCAAGCTCCCTGAGACAGAAGCACAGCGGGCCTCCTGCCTGAAGTGGCTGTCGGAGTGGACGCTGGAGCCGGACAACTGA

Related Sequences

bmy_01895T0 SequenceType object (3)

Length: 313 aa      View alignments
>bmy_01895T0
MEPGSVENLCVVYRSRDFLVVNKHWDVRIDSKAWWETLTLQKQLQHRFPELADPDTCYGFRFCHQLDFSTSGALCVALNKAAAGSAYRCFKDRKVTKAYLALVRGHVQESRMTISYAIGKNSTEGRTHTMCIEGTQGCENPKPSLTELMVLEHGLYAGDPVSKVLLQPLTGRTHQLRVHCSSLGHPIVGDQTYGQASSQEDQPFRMMLHAFYLRIPTCTECVEACTPDPFVPTLDACWSPHTLVQPLDELVQVLRAAPDPDPTEGGPRPCSPSMPLPGPGRPPPPPAKLPETEAQRASCLKWLSEWTLEPDN*