Sequence detailsbmy_01896 (Coding sequence)

Part of scaffold_47 (SequenceType object (1))

For more information consult the page for scaffold_47 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

CHTF18ENSTTRG00000010171 (Bottlenosed dolphin)

Gene Details

CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000009665, Bottlenosed dolphin)

Protein Percentage 94.93%
cDNA percentage 95.34%
Ka/Ks Ratio 0.20026 (Ka = 0.0274, Ks = 0.1366)

CHTF18ENSBTAG00000019743 (Cow)

Gene Details

chromosome transmission fidelity protein 18 homolog

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000026311, Cow)

Protein Percentage 87.61%
cDNA percentage 89.22%
Ka/Ks Ratio 0.14948 (Ka = 0.0606, Ks = 0.4057)

CHTF18 (Minke Whale)

Gene Details

CTF18, chromosome transmission fidelity factor 18 homolog (S. cerevisiae)

External Links

Gene match (Identifier: BACU009241, Minke Whale)

Protein Percentage 98.3%
cDNA percentage 98.12%
Ka/Ks Ratio 0.10426 (Ka = 0.0069, Ks = 0.0661)

Additional orthologs identified in other species via the OPTIC pipeline.

CHTF18 (Human)   Chtf18 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 2940 bp    Location:1663179..1671717   Strand:+
Raw sequence 
>bmy_01896
CCGCCCCTCCCGCTGACCAATGGCGAGCGCCCGGGTACGCCGGCCGTTGATTGGCGGCGCCGGGTCGCTTTGGGCTGGAGCTGCGCGCGGGAGGTTCGTAGCCGGCGGCGGGCGGCCATGGAGGACTACGAGCGGGAGCTGTACGGCGTCGAGGACGACTTCCACAGCCAGTTCGCGGCCGAGCTCGAGGTGCTGGACGAGCTGGAAGGGACAACCGCCATGTCACCTTCCAGGGACCCCTGGCCCACCGTGGGCCGGCCCCGCCTGACCTTCGAGGAGACCATTGCTGGAGGGAACGCTGCCACTCACTGCTCTCCAGCCGGACCTCCAAGGAACAGCAAGGGCGGTGCCAGGAAGAGGCAGCTGGCCGCTGACATCCACGGGGACAGACCCCTGCCCCCTACCCCCAAAGTCAAACGGTCCAGGCTGGAAGCTGCCAGGAGACTGAACTTCAGGTCCGATGAGATGGAAGAGCCGCTGCCTCCTGATTCCCCCACTCAGGACATCACCCCCCCAACGAGTCCTGAGGTCCCTGCTGAGCTGTGGGGCAAGGGGCCCTTGGACACCGGGGCTGATGTGGGTCTCACTAGGGCCTCGCCAGCCGCCCGCAATCCTGTCCTGAGGCGGCCCCCTGTCTTGGAGGACTACATCAATGTGACCTCCACGGGCGGCGACCGGGCCTTTCTGGTGCTTCGGGCTGACCCAGTGGGCACTGGGGTCCAGAGCCCTCTTCTTGACATCCGGTGGCGTGGCCGTGGCCAGCTGGACCTGCTGGGCGTGTCCTTTGCCTCCCTGAAGGAGAAGATTGACAGCGAGTTCACCAACCGCTGCCTCCTCAAGTGGCTGAAGCTGTGGGACTTGGTGGTGTTTGGCCGAGAGCGACCCACCCGGAAGCCCAGACCCAGTGTGGAACCGGCCCGTGGTGGCAAGGAGGCCACAGCCTCCAGCAAGTGGAAAAGCCACGGACAGGTGCTAGAGGAGATGCTGGAGGCTGAGCTGGATCCAAGCGGGCGGCCCCGGCAGAAGGTGGCGCTGCTGTGTGGGCCCCCAGGGCTGGGCAAGACCACTCTGGCCCATGTGATTGCGCGGCATGCCGGGTACTCTGTGGTGGAGATGAACGCGAGTGATGACCGCAGCCCTGAGGCCTTCCGAACGCGCATCGAGGCAGCCACGCAGATGGAGTCGGTGTTGGGCACTGGTGGGAGGCCCAACTGCCTGGTTATCGATGAGATCGACGGGGCCCCCACGGCCGCCATCAATGTTCTTCTGAGCGTCTTGGACCGCCAGGGCCCACAGGAGGCAGAGCCAGGGGGCCCCGCTGTGCCCACGGGTGGGGGGCGGCGGCGCCGGGCGGAAGGGGGGATCCTGATGAGGCCCATCATCTGCATCTGCAATGACCAGTTCGCGCCCTCCCTTCGGCAGCTGAAGCAGCAGGCGCTCCTGCTCCACTTTCCGCCCACGCTGCCCTCCAGGCTCACGCAGCGGCTCCAGGAGATCTCCCTGCGGCGGGGCATGCGGGCTGACCCTGGCGCGCTGGCGGCCCTCTGCGAGAAGACAGACAACGACATCCGTGCCTGCATCAATGCCCTGCAGTTCCTGCATGGGCGGGGCCAGCGGGAGCTGAGCGTTCAGGCCGTGCAGACCACACGCATTGGCCTCAAGGACCAGCGCAAGGGGCTCTTCTCCGTGTGGCAGGAGGTCTTCCAGCTGCCCCAGGCCCAGAGGCGCCGCGTGGGTCAGGACCCGACTCTGCCCACCCACACACTCCTGCTCGGTGATGGGCACATGGGCTCAGGGCCCCTCGCTGCCAAGGTGCCCCTGACCGCGGCCTCTCAGCGGTTCTACCACATCTTGCATGTGGCTGCTTCTGCGGGTGAGCACGAAAAGGTGGTCCAGGGCCTGTTCGACAACTTTTTGCGTCTGAGGCTGCGGGACTCCAGCTTGGCGGCCGTGTGCATAGCCCTTGACTGGCTGGCCTTTGACGACCTGCTGGGCCGGGCCGCCCACCACGGCCAGAGCTTCCAGCTGCTGCGCTACCTGCCCTTCCTGCCCCCGGCCTTCCACCTGCTCTTTGCCTCCAGCCACGTGCCGAGGATCACCTTTCCCAGCAGCCAGCAGGAGGTGCGCCCCACGCCCTGCCCATACCCAGGGTCTAACCCCGGGGCCCTGGGTGACTTGGTCCTCGTCCGCCCTCCACCCCAGGCCCAGAATCGGATGAGCCGGACACACAACCTGATCCAGACGCTGGTGTCGGGCATCACGCCAGCCACCCGCAGCCGGGCTGCACCGCAGGCGCTCATCCTGGACACCCTCTGCCTGCTCCTGGACATCCTCGCACCCAAGCTGCGCCCCGTGAGCACACAGCTGTACAGCGCCCGAGAGAAACAGCAGCTGGCCAGCCTCGTGGGCACCATGCTCGCCTATAGCCTCACCTACTGCCAGGAGCGCACGCCCGATGGGCAGTATGTCTACAGGCTGGAGCCCAGGAACGTGGAGGATGTCTGCCGCTTTCCCGAGCTGCCCACCCGCAAGCCCCTCACCTACCAGGCCAAGCAGCTCATTGCCCGCGAGATTGAAGTGGAGAAGATGCGGCGGGTGGAGGCCTTGGCCCGGGCTAGGGTTGGCSCCCAGGTGGACGGGGGTCCCCTGGGGGGCACTGGGGAGAAAGGGGCGCAGCCATCTTCCCCGTGCAGCCACGAGCAGCGGCTGGAGTGCATCCTGAAGAGAGCTGCCCTGGAGGAGCAGCCCGAGAGGGACTTTTTCGGTCGTGTTGTTGTCAAGAGAGCGGCAGCCCCGAGCACAGAGCACGCAGCCCCTGAGACTGACACGGCTGAGCAGCGCATGGGCACCGCGGTGGGCAGGAGCGACGTCTGGTTCCGCTTCAAGGAGGGCGTCTCCAACGCCGTGCGGCGCAGCCTGTACATCAGAGACCTGCTGTAG

Related Sequences

bmy_01896T0 SequenceType object (3)

Length: 980 aa      View alignments
>bmy_01896T0
PPLPLTNGERPGTPAVDWRRRVALGWSCAREVRSRRRAAMEDYERELYGVEDDFHSQFAAELEVLDELEGTTAMSPSRDPWPTVGRPRLTFEETIAGGNAATHCSPAGPPRNSKGGARKRQLAADIHGDRPLPPTPKVKRSRLEAARRLNFRSDEMEEPLPPDSPTQDITPPTSPEVPAELWGKGPLDTGADVGLTRASPAARNPVLRRPPVLEDYINVTSTGGDRAFLVLRADPVGTGVQSPLLDIRWRGRGQLDLLGVSFASLKEKIDSEFTNRCLLKWLKLWDLVVFGRERPTRKPRPSVEPARGGKEATASSKWKSHGQVLEEMLEAELDPSGRPRQKVALLCGPPGLGKTTLAHVIARHAGYSVVEMNASDDRSPEAFRTRIEAATQMESVLGTGGRPNCLVIDEIDGAPTAAINVLLSVLDRQGPQEAEPGGPAVPTGGGRRRRAEGGILMRPIICICNDQFAPSLRQLKQQALLLHFPPTLPSRLTQRLQEISLRRGMRADPGALAALCEKTDNDIRACINALQFLHGRGQRELSVQAVQTTRIGLKDQRKGLFSVWQEVFQLPQAQRRRVGQDPTLPTHTLLLGDGHMGSGPLAAKVPLTAASQRFYHILHVAASAGEHEKVVQGLFDNFLRLRLRDSSLAAVCIALDWLAFDDLLGRAAHHGQSFQLLRYLPFLPPAFHLLFASSHVPRITFPSSQQEVRPTPCPYPGSNPGALGDLVLVRPPPQAQNRMSRTHNLIQTLVSGITPATRSRAAPQALILDTLCLLLDILAPKLRPVSTQLYSAREKQQLASLVGTMLAYSLTYCQERTPDGQYVYRLEPRNVEDVCRFPELPTRKPLTYQAKQLIAREIEVEKMRRVEALARARVGXQVDGGPLGGTGEKGAQPSSPCSHEQRLECILKRAALEEQPERDFFGRVVVKRAAAPSTEHAAPETDTAEQRMGTAVGRSDVWFRFKEGVSNAVRRSLYIRDLL*