Sequence detailsbmy_01972 (Coding sequence)

Part of scaffold_50 (SequenceType object (1))

For more information consult the page for scaffold_50 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

EMP1ENSTTRG00000012680 (Bottlenosed dolphin)

Gene Details

epithelial membrane protein 1

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000012028, Bottlenosed dolphin)

Protein Percentage 85.22%
cDNA percentage 86.38%
Ka/Ks Ratio 0.17008 (Ka = 0.1002, Ks = 0.5892)

EMP1ENSBTAG00000036078 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000047239, Cow)

Protein Percentage 84.21%
cDNA percentage 86.55%
Ka/Ks Ratio 0.19138 (Ka = 0.1005, Ks = 0.5251)

EMP1 (Minke Whale)

Gene Details

epithelial membrane protein 1

External Links

Gene match (Identifier: BACU016982, Minke Whale)

Protein Percentage 96.52%
cDNA percentage 97.68%
Ka/Ks Ratio 0.91045 (Ka = 0.0236, Ks = 0.0259)

Additional orthologs identified in other species via the OPTIC pipeline.

EMP1 (Human)   Emp1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 348 bp    Location:1959619..1943507   Strand:-
Raw sequence 
>bmy_01972
ATGTCCGGTCTGGCGTCCTGGTCCAAGGACCCCCTGGATTTTACATTGTTTGAGGATGCCCTCAAGGCAGTGCAGGCCTTCATGATTCTGTCCATCATCTTCTCCGTCATCTCCCTTGTGGTCTTCGTGTTCCAGCTGTTCACCATGGAGAAAGGCAACCGCTTCTTCCTCTCGGGGGCCACCATGCTGTTGTGCTGGCTGTGCATCTTGGTGGGGGCCTCCATCTACACTCATCACTATGCCAGCAACTCTCAAGGTCACCACGGCTATTCCTTCATCCTGACCTGGATCTGCTTCTGCTTCAGCTTCATCATCGGCATTCTCTACCTGGTCCTGAGAAAGAAATAA

Related Sequences

bmy_01972T0 SequenceType object (3)

Length: 116 aa      View alignments
>bmy_01972T0
MSGLASWSKDPLDFTLFEDALKAVQAFMILSIIFSVISLVVFVFQLFTMEKGNRFFLSGATMLLCWLCILVGASIYTHHYASNSQGHHGYSFILTWICFCFSFIIGILYLVLRKK*