Sequence detailsbmy_01992 (Coding sequence)

Part of scaffold_49 (SequenceType object (1))

For more information consult the page for scaffold_49 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

AHDC1ENSBTAG00000037456 (Cow)

Gene Details

AT-hook DNA-binding motif-containing protein 1

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000053665, Cow)

Protein Percentage 97.37%
cDNA percentage 93.25%
Ka/Ks Ratio 0.03888 (Ka = 0.0125, Ks = 0.3214)

AHDC1 (Minke Whale)

Gene Details

AT hook, DNA binding motif, containing 1

External Links

Gene match (Identifier: BACU003247, Minke Whale)

Protein Percentage 99.36%
cDNA percentage 99.23%
Ka/Ks Ratio 0.11532 (Ka = 0.0028, Ks = 0.0243)

Additional orthologs identified in other species via the OPTIC pipeline.

AHDC1 (Human)   Ahdc1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 4791 bp    Location:223891..228681   Strand:+
Raw sequence 
>bmy_01992
ATGCGTGTGAAGCCCCAGGGCCTGGTGGTGACTTCCAGTGCCGTGTGCAGCTCTCCTGACTACCTCCGGGAGCCCAAGTACTACCCCGGCGGCCCCCCCCCCCCCCGGCCCTTGCTTCCCGCCCGGCCCCCTGCCAGCCCACCCGACAAGGCCTTCGCCCACACCTTCTCCGAGAACCCGCGCCCACCCCCACGCCGGGACCCCAGCACCCGGCGCCCACCAGTTCTTGCCAAGGGGGACGACCCGCTGCCCCCGAGGGCAGCCCGTCCTGTCTCCCAGGCCCGCTGCCCCACCCCCGCGGGAGACGACAGCAGCTCCCGACGGCGCTGGGACAACGGGCGGGTGAACCTGCGTCCAGTGGTCCAGCTGATTGACATCATGAAGGACCTGACCCGGCTCTCCCAGGACCTGCAGCACAGCGGTGTGCACCTGGACTGCGGTGGCCTCCGGCTCAGCCGCCCACCTGCCCCGCCCCCCGGGGACCTTCAGTATAGCTTCTTCTCCTCACCCAGCCTGGCCAACAGCATCCGCAGCCCTGAGGAGCGGGCCACCCCCCACGCCAAGTCTGAGCGGTCCAGCCACCCCCTCTACGAGCCTGAGCCTGAGCCTAGGGACAGTCCCCAGCCCGGCCAAGGCCATAGTCCCGGAGCCACGGCCGCGGCCACCGGTCTGCCACCAGAGCCCGAGCCAGACGGCCCTGATTACTCAGAACTCGCTGACGCCGACATCCTGAGTGAGCTGGCCTCCCTTACTTGCCCCGAGGCCCAGCTGCTGGAGGCCCAGGCCCTCGAGCCACCGTCGCCTGAGCCAGAGCCTCAGCTCCTAGACCCCCAGCCCCGCTTCCTGGACCCGCAGGCACTAGAGCCGCTCGGGGAAGCTTTGGAGCTGCCGCCCCTGCAACCTCTTGCTGATCCTCTGGGGTTGCCGGGCCTGGCTCTACAGGCCCTAGATACCCTGCCCGACTCCCTGGAGTCGCAGCTGCTCGACCCTCAGGCACTTGACCCCTTGCCCAAGTTGCTTGACATCCCTAGCCGCCGTCTGGAGCCCCAGCAGCCCCTGGGACCCTGCCCGCTGGCTGAGCCCTTGCGCCTGGACTTGTGCTCACCCCATGGCCCTCCTGGGCCTGAGGGTCACCCCAAATACGCCTTGCGGCGCACCGATAGGCCAAAGATCCTGTGTCGCCGACGGAAAGCCGGACGGGGACGCAAGGCAGACGCCGGCCCCGAGGGCCGTCTGCTGCCCCTGCCTGTGCCCACAGGGCTGGCGGCTGCCCTGGCTGAGCCCCCGCCCCCGCCCCCGCCCCCACCTCACGGCCTGCCCGGCCCAGGCCCAGTCCCAGAGCTGGAGCCTGAATCCTCCCAGACCCCAGTGGTCCCTACCCGCAGAGGCAAGTGCCGGGGCGTGCGGCGCATGGTGGTCAAGATGGCCAAGATCCCCGTGTCACTGGGCCGGCGGAACAAGACCACGTACAAGGTGTCGTCTTTGAGCAGCAGCCTGAGCGTGGAGGGCAAGGAGCTGGGCCTGCGCGTGTCCACAGAGCCCACCCCGCTGCTGAAGATGAAGAACAATGGGCGGAACGTGGTGGTGGTCTTCCCACCCGGCGAGATGCCCATCATTCTCAAGCGGAAGCGCGGCCGCCCTCCTAAGAACCTGCTCCTGGGCCCCGGCAAGCCCAAGGAGCCAGCGGTGGTGGCGGCCGAGGCAGCCACTGTGGCGGCAGCCACCATGGCCATGCCGGAGGTGAAGAAACGGCGGCGGCGGAAGCAGAAGCTGGCATCTCCCCAGCCGTCCTACGCAGCGGATGCCAACGACAGCAAGGCCGAGTACTCAGACGTCCTCGCCAAGCTGGCCTTCCTGAACCGCCAGAGCCAGTGCGCTGGGCGGTGCTCACCGCCCCGCTGCTGGACACCCAGTGAGCCCGAGTCAGTGCACCAGGCGCCCGACACGCAGAGCATCTCCCACTTCCTGCACCGTGTGCAGGGCTTCCGACGGCGAGGTGGCAAAGCAGGCGGTTTTGGTGGCCGGGGTGGGGGCCACGCGGCCAAGGCGGCCCGATGCTCCTTCAGCGACTTCTTTGAGGGCATCGGCAAGAAAAAGAAGGTGGTGGCCGTGGCAGCCGCTGGGGTCGGGGGCCCTGGCCTCGCTGAGTTGGGGCACCCACGCAAACGGGGCCGGGGGGAGGTAGACGCCGTGACTGGGAAGCCCAAACGCAAGAGGCGGTCCCGGAAGAATGGGACTCTGTTCCCGGAACAGGTGCCCAGCGGCCCAGGCTTTGGGGAGGCGGGCACCGAGTGGGCCGGGGACAAGGGTGGTGGCTGGGCCCCTCACCATGGGCACCCAGGCGGGCAAGCTGGCCGAAACTGCGGGTTCCAGGGGACCGAGGCCCGGGCCTTTGCCTCCACTGGGCTAGAGAGCGGGGCTTCGGGCCGTGGCAGCTACTACAGCACAGCCGCACCGGCGGGCCAGACGGAGCTCAGCCAGGAGCGCCAAAACCTCTTCACCGGCTATTTTCGCTCCCTGCTCGACTCGGATGACTCCTCCGACCTCTTGGACTTTGCCCTCTCAGCCTCTCGCCCCGAGTCCCGGAAGGCATCAGGCACCTACACAGGGCCCCCCAGCAGTGCCCTGCCCGCCCAGCGGGGCCTGGCCACCTTCCCCAGCCGGGGAGCCAAGGCCAGCCCGGTGGCGGTGGGCAGCAGCGGGGCTGGGGCGGACCCTTCCTTCCAGCCGGTTCTGCCCACTCGCCAGACCTTCCCGCCGGGCCGGGCAGCGAGCTATGGGCTAACCCCCGGCACTTCAGACTGCCGGGCAGCCGAGACCTTCCCGAAGCTGGCTCCTCTGCCTTCTGCCGTGGCCCGCTCACCTACCACACACCCGCCCGCCAACACCTACCCCCCGCAGTACGGGGGCTACGGGGCTGGACAAAGTGTATTCGCACCCGCTAAGCCCTTTACGGGCCAGGACTGCGCTAATAGCAAGGACTGCAGCTTCGCCTATGGCAGTGGCAACAGCCTCCCTGCCTCACCCAGCAGCGCCCACAGCGCTGGCTACGCCCCACCGCCTACCGGTGGCCCCTGCCTGCCACCGAGCAAGGCGTCCTTCTTCAACAGCTCTGAGGGGGGCCCCTTCTCTGGTTCGGCCCCCACACCCCTGCGCTGTGACAGCCGGGCCAGCACGGTCTCACCCGGCGGCTACATGGTACCCAAGGGCACCACAGCCTCTGCCACCTCTGCCGCCTCCTCGTCGTCCTCCTCCTTCCAGCCCTCGCCTGAGAACTGTCGGCAGTTTGCGGGGGCTTCTCAGTGGCCTTTCCGGCAGGGCTATGGAGGCCTGGACTGGGCCTCGGAGGCCTTCAGTCAGCTCTACAATCCCGGTTTCGACTGCCACGTCAGCGAGCCCAACGTGATCCTGGACATCTCCAACTACACGCCGCAGAAGGTGAAGCAGCAGACGGCCGTGTCCGAGACCTTCTCCGAGTCGTCCTCCGACAGCACCCAGTTCAATCAGCCCGTCGGCGGCGGTTTCCGGCGGGCCAACAGCGAGGCCTCGAGCAGCGAGGGCCAGTCGAGCCTGTCCAGCCTGGAGAAGCTGATGATGGACTGGAACGAGGCATCGTCCGCCCCCGGTTACAACTGGAACCAGAGCGTCCTCTTCCAGAGCAGCTCCAAGCCAGGCCGCGGACGGCGGAAGAAGGTGGACCTGTTCGAGGCCTCACATCTGGGCTTCCCGTCAACCGCCTCGGCCAGCGCCGCGGGCTACCCATCCAAACGGAGCACCGGGCCCCGGCAGCCTCGGGGCGGACGGGGTGGCGGGGCCTGCTCAGCCAAGAAGGAGCGGGGCGGTGCGGCGGCCAAAGCCAAGTTCATCCCCAAGCCACAGCCGGTCAACCCGCTGTTCCAGGACAGCCCAGACCTCGGCCTGGACTACTACAGCGGGGACAGCAGCATGTCACCACTGCCCTCGCAGTCGAGGGCCTTCAGCGTGGGCGAGCGAGATCCCTGTGACTTCATGGGACCCTACTCCATGAACCCGTCCACGCCATCGGACGGCACCTTCGGCCAAGGCTTCCACTGCGACTCGCCCAGCCTGGGTGCCCCTGAGCTGGATGGCAAGCATTTCCCGCCGCTGGCCCACCCGCCCACGGTGTTTGATGCTGGCCTGCAGAAGGCCTACTCCCCCACCTGCTCCCCGACCCTGGGCTTCAAGGAAGAGCTGCGGCCGCCACCCACAAAGCTGGCTGCCTGTGAGCCCCTCAAGCATGGGCTCCAGGGGGCCAGCCTGAGCCATGCAGCTGCAGCCCAGGCCCACCTGAGCTGCCGGGACCTGCCGCTGGGCCAGCCCCACTACGACTCCCCCAGCTGCAAGGGTACGGCCTATTGGTACCCGCCAGGCTCGGCCGCCCGCAGCCCGCCCTATGAAGGCAAGGTGGGTTCAGGGCTGCTGGCTGACTTCCTGGGCAGGACGGAGGCCGCGTGCCTCAGTGCCCCACACCTGGCTAGCCCACCGGCCACACCTAAGGCCGACAAGGAGCCACTGGAGATGGCCCGGCCGCCCGGCCCACCCCGTGGCCCCGCTGCAGCTGCTGCTGGCTATGGCTGCCCACTCCTTAGTGACTTGACCCTGTCCCCCGTGCCGAGGGACTCGCTGCTGCCCCTGCAGGATACCGCCTACAGGTATCCAGGCTTTATGCCGCAGGCGCATCCCGGCCTGGGTGGGGGCCCCAAGAGCGGCTTCCTGGGGCCCATGGCGGAACCTCACCCTGAGGACACATTCACCGTCACCTCCCTGTAG

Related Sequences

bmy_01992T0 SequenceType object (3)

Length: 1597 aa      View alignments
>bmy_01992T0
MRVKPQGLVVTSSAVCSSPDYLREPKYYPGGPPPPRPLLPARPPASPPDKAFAHTFSENPRPPPRRDPSTRRPPVLAKGDDPLPPRAARPVSQARCPTPAGDDSSSRRRWDNGRVNLRPVVQLIDIMKDLTRLSQDLQHSGVHLDCGGLRLSRPPAPPPGDLQYSFFSSPSLANSIRSPEERATPHAKSERSSHPLYEPEPEPRDSPQPGQGHSPGATAAATGLPPEPEPDGPDYSELADADILSELASLTCPEAQLLEAQALEPPSPEPEPQLLDPQPRFLDPQALEPLGEALELPPLQPLADPLGLPGLALQALDTLPDSLESQLLDPQALDPLPKLLDIPSRRLEPQQPLGPCPLAEPLRLDLCSPHGPPGPEGHPKYALRRTDRPKILCRRRKAGRGRKADAGPEGRLLPLPVPTGLAAALAEPPPPPPPPPHGLPGPGPVPELEPESSQTPVVPTRRGKCRGVRRMVVKMAKIPVSLGRRNKTTYKVSSLSSSLSVEGKELGLRVSTEPTPLLKMKNNGRNVVVVFPPGEMPIILKRKRGRPPKNLLLGPGKPKEPAVVAAEAATVAAATMAMPEVKKRRRRKQKLASPQPSYAADANDSKAEYSDVLAKLAFLNRQSQCAGRCSPPRCWTPSEPESVHQAPDTQSISHFLHRVQGFRRRGGKAGGFGGRGGGHAAKAARCSFSDFFEGIGKKKKVVAVAAAGVGGPGLAELGHPRKRGRGEVDAVTGKPKRKRRSRKNGTLFPEQVPSGPGFGEAGTEWAGDKGGGWAPHHGHPGGQAGRNCGFQGTEARAFASTGLESGASGRGSYYSTAAPAGQTELSQERQNLFTGYFRSLLDSDDSSDLLDFALSASRPESRKASGTYTGPPSSALPAQRGLATFPSRGAKASPVAVGSSGAGADPSFQPVLPTRQTFPPGRAASYGLTPGTSDCRAAETFPKLAPLPSAVARSPTTHPPANTYPPQYGGYGAGQSVFAPAKPFTGQDCANSKDCSFAYGSGNSLPASPSSAHSAGYAPPPTGGPCLPPSKASFFNSSEGGPFSGSAPTPLRCDSRASTVSPGGYMVPKGTTASATSAASSSSSSFQPSPENCRQFAGASQWPFRQGYGGLDWASEAFSQLYNPGFDCHVSEPNVILDISNYTPQKVKQQTAVSETFSESSSDSTQFNQPVGGGFRRANSEASSSEGQSSLSSLEKLMMDWNEASSAPGYNWNQSVLFQSSSKPGRGRRKKVDLFEASHLGFPSTASASAAGYPSKRSTGPRQPRGGRGGGACSAKKERGGAAAKAKFIPKPQPVNPLFQDSPDLGLDYYSGDSSMSPLPSQSRAFSVGERDPCDFMGPYSMNPSTPSDGTFGQGFHCDSPSLGAPELDGKHFPPLAHPPTVFDAGLQKAYSPTCSPTLGFKEELRPPPTKLAACEPLKHGLQGASLSHAAAAQAHLSCRDLPLGQPHYDSPSCKGTAYWYPPGSAARSPPYEGKVGSGLLADFLGRTEAACLSAPHLASPPATPKADKEPLEMARPPGPPRGPAAAAAGYGCPLLSDLTLSPVPRDSLLPLQDTAYRYPGFMPQAHPGLGGGPKSGFLGPMAEPHPEDTFTVTSL*