Part of scaffold_49 (Scaffold)

For more information consult the page for scaffold_49 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SEPN1 ENSTTRG00000012465 (Bottlenosed dolphin)

Gene Details

selenoprotein N, 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000011829, Bottlenosed dolphin)

Protein Percentage 89.08%
cDNA percentage 91.89%
Ka/Ks Ratio 0.36665 (Ka = 0.0703, Ks = 0.1916)

BT.106328 ENSBTAG00000021778 (Cow)

Gene Details

selenoprotein N

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000029033, Cow)

Protein Percentage 86.26%
cDNA percentage 86.96%
Ka/Ks Ratio 0.15324 (Ka = 0.0876, Ks = 0.5719)

SEPN1  (Minke Whale)

Gene Details

selenoprotein N, 1

External Links

Gene match (Identifier: BACU007585, Minke Whale)

Protein Percentage 95.11%
cDNA percentage 96.61%
Ka/Ks Ratio 0.32793 (Ka = 0.027, Ks = 0.0824)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1593 bp    Location:1605046..1589386   Strand:-
>bmy_02038
ATGTGGCAGGAGCAGCTCCCTCCACCCGTTCGGGATGCCAGTTGGGTGTACAGCTGCTCAGCCCAGCCACCTCCTCCCGAGCAGGACTCGGCGCTGAAAGCCCTGGGGACAGAAGGCCTCTTCCTCTTTTCCTCTCTGGACACTGACGGGGACACGTACCTCAGCCCCGAGGAGTTCAAGCCCATTGCTGAGAAGCTGACAGGGTCAACTCCTTCGGCCAGCTATGAGGAGGAGGATCTGCCCCCTGACCCCAGCGAGGAGACACTTACCATAGAAGCCCGATTCCAGCCTCTGCTGCCAGAGTCCATGACCAAGAGCAAAGATGGGTTCCTAGGGGTCTCCCGCCTGGCCCTGTCCGGCCTCCGCAACTGGACGACCGCAGCCTCGCCAAGTGCGGTGTTTGCCGCCCGCCACTTCCGGCCCTTTCTTCCCCCTCGGGGCCACGCGGAGCTGGGCGAGCCCTGGTGGATCATCCCCAGTGAGCTGAGCGTCTTCACCGGCTATCTGTCCAACAACCGCTTCTACCCACCACCCCCCAAGGGCAAGGAGGTCATCATCCACCGGCTCCTGAGCATGTTCCACCCTCGGCCCTTCGTGAAGACCCGCTTTGCCCCTCAGGGGGCTGTCGCCTGCCTGACCGCCACCAGCGACTTCTACTACACCGTGATGTTCCGCATCCACGCCGAGTTCCAGCTCAGCGAGCCGCCCGACTTCCCCTTCTGGTTTTCACCCGGCCAGTTCACGGGCCACATCATCCTCTCCAAAGACGCCACCCACGTCCGTGACTTCCGGCTCTTCGTGCCCAACCACAGGTCTCTGAATGTGGACATGGAGTGGCTGTACGGGGCCAGCGAGAGCAGCAACATGGAGGTGGACATCGGCTACATACCCCAGATGGAGCTGGAGGCCACGGGCCCCTCAGTGCCCTCTGTGATCCTGGACGAGGATGGCAACATGATCGACAGCCGCCTGCCCTCGGGGGAGCCCCTCCAGTTTGTGTTTGAGGAGATCACGTGGCAGCAGGAGCTGAGCTGGGAGGAGGCCGCCCGGCGCCTGGAGGTGGCCATGTACCCCTTCAAGAAGGTGAGGCCAGACAGGGGTAAGGGGCGGGGTTGGGATCCCTGGGGCTGGGTCCGGAGCTGTGGGAGCAGCAGTGGGCACTGGGCGTGGGATGCCATGCAGGGCTTGCTGCTGAGGCTGCCTCCCTGTTCAGGGCGGACTCTCCGGGAAACTGTCCTGGAAAGTTCGCCCATCCTCGCCCTCCTCAACGAGAGCTTCATCAGCACCTGGTCCCTAGTGAAGGAGCTGGAGGACCTGCAGAACAACCAGGAGAACCCATCCCACAAGAAGCTGGCCAGCCTGCACCTGGAGAAGTACAGCTTCCCCGTGGAGATGATGATCTGCCTGCCCAATGGCACCGTGGTCCACCACATCAACGCCAACTACTTCTTGGACATCACCTCTGTGAAGCCTGAGGACGTCCAGAACAATGTCTTCAGCTTCTCATCCACCTTTGAAGACCCGTCCACAGCCACCTACATGCAGTTCCTGAAGGAGGGCCTCCGGCGCGGCCTGCCCCTCCTCCAGGCCTAG

Related Sequences

bmy_02038T0 Protein

Length: 531 aa     
>bmy_02038T0
MWQEQLPPPVRDASWVYSCSAQPPPPEQDSALKALGTEGLFLFSSLDTDGDTYLSPEEFKPIAEKLTGSTPSASYEEEDLPPDPSEETLTIEARFQPLLPESMTKSKDGFLGVSRLALSGLRNWTTAASPSAVFAARHFRPFLPPRGHAELGEPWWIIPSELSVFTGYLSNNRFYPPPPKGKEVIIHRLLSMFHPRPFVKTRFAPQGAVACLTATSDFYYTVMFRIHAEFQLSEPPDFPFWFSPGQFTGHIILSKDATHVRDFRLFVPNHRSLNVDMEWLYGASESSNMEVDIGYIPQMELEATGPSVPSVILDEDGNMIDSRLPSGEPLQFVFEEITWQQELSWEEAARRLEVAMYPFKKVRPDRGKGRGWDPWGWVRSCGSSSGHWAWDAMQGLLLRLPPCSGRTLRETVLESSPILALLNESFISTWSLVKELEDLQNNQENPSHKKLASLHLEKYSFPVEMMICLPNGTVVHHINANYFLDITSVKPEDVQNNVFSFSSTFEDPSTATYMQFLKEGLRRGLPLLQA*