Sequence detailsbmy_02048 (Coding sequence)

Part of scaffold_49 (SequenceType object (1))

For more information consult the page for scaffold_49 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RUNX3ENSBTAG00000019800 (Cow)

Gene Details

runt-related transcription factor 3

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000026378, Cow)

Protein Percentage 91.35%
cDNA percentage 91.67%
Ka/Ks Ratio 0.0321 (Ka = 0.0373, Ks = 1.1614)

RUNX3 (Minke Whale)

Gene Details

runt-related transcription factor 3

External Links

Gene match (Identifier: BACU007593, Minke Whale)

Protein Percentage 99.52%
cDNA percentage 99.68%
Ka/Ks Ratio 0.11147 (Ka = 0.0018, Ks = 0.0161)

Additional orthologs identified in other species via the OPTIC pipeline.

RUNX3 (Human)   Runx3 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 630 bp    Location:2308002..2313484   Strand:+
Raw sequence 
>bmy_02048
ATGCGGGTGACGCCGAGCACGCCCAGCCCCCGAGGCTCGCTCAGCACCACCAGCCACTTCAGCAGCCAGGCCCAGACCCCCATCCAAGGCGCCTCCGACCTGAACCCTTTCTCCGACCCCCGCCAGTTTGACCGCTCCTTCGCAGCGCTGCCGACCCTCCCGGAGAGCCGCTTCCCCGACCCCCGGATGCATTACCCAGGGGCCATGTCGGCCGCCTTCCCCTACAGCGCCACCCCCTCGGGCACGAGCATCAGCAGCCTCGGCGTGGCCAGCATGCCGGCCACCGGCCGCTTCCACCACACCTACCTCCCACCGCCCTACCCGGGGGCCCCGCAGAACCAGAGCGGGCCCTTCCAGGCCAACCCTTCCCCCTACCACCTCTACTACGGCGCTTCCTCCGGCTCTTACCAGTTCTCCATGGTGGCCGGCAGCAGCAGCGCTGGCGACCGCTCGCCCACCCGCATGCTGGCCTCCTGCCCCAGCAGCGCCGCCTCTGTCGCCACCGGCAACCTCATGAACCCCAGCCTGGGTGGCCAGAGCGACGGCGTGGAGGCCGATGGCAGTCACAGCAACTCGCCTACCGCCCTGAGCACGCCCGGCCGCATGGACGAGGCCGTGTGGCGGCCCTAC

Related Sequences

bmy_02048T0 SequenceType object (3)

Length: 210 aa      
>bmy_02048T0
MRVTPSTPSPRGSLSTTSHFSSQAQTPIQGASDLNPFSDPRQFDRSFAALPTLPESRFPDPRMHYPGAMSAAFPYSATPSGTSISSLGVASMPATGRFHHTYLPPPYPGAPQNQSGPFQANPSPYHLYYGASSGSYQFSMVAGSSSAGDRSPTRMLASCPSSAASVATGNLMNPSLGGQSDGVEADGSHSNSPTALSTPGRMDEAVWRPY