Part of scaffold_53 (Scaffold)

For more information consult the page for scaffold_53 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

RSPO1 ENSTTRG00000008602 (Bottlenosed dolphin)

Gene Details

R-spondin 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008156, Bottlenosed dolphin)

Protein Percentage 89.88%
cDNA percentage 92.44%
Ka/Ks Ratio 0.30819 (Ka = 0.0612, Ks = 0.1984)

BT.27743 ENSBTAG00000003837 (Cow)

Gene Details

R-spondin-1 precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000005002, Cow)

Protein Percentage 85.43%
cDNA percentage 86.5%
Ka/Ks Ratio 0.12802 (Ka = 0.0828, Ks = 0.647)

RSPO1  (Minke Whale)

Gene Details

R-spondin 1

External Links

Gene match (Identifier: BACU009687, Minke Whale)

Protein Percentage 46.3%
cDNA percentage 58.26%
Ka/Ks Ratio 0.41947 (Ka = 0.5713, Ks = 1.362)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1098 bp    Location:2332141..2335995   Strand:+
>bmy_02123
ATGGAGGTCTCTCCCACAGCTGCCTCTCACCCTTGCTCCATCCTTGCAGTCAGCGCCGAGGGGAGCCAGGCCTGTGCCAAAGGCTGTGAGCTCTGTTCGGAGGTCAACGGCTGCCTTAAGTGCTCACCCAAGCTGTTCATCTTGCTGGAGAGGAACGACATCCGCCAGGTGGGCGTCTGCTTGCCGTCCTGCCCACCTGGATACTTCGATGCCCGCAACCCTGACATGAACAAGTGCATCAACTCCCCTGCGGTAATTGCAGCCCCAGGCCCCTGTCCTGCCCTGTGTGAGTGGGCGTGGCTGGGTGGGCACAGGGACCAGGGGAGGCGTCCATCCACGGCTGAGCCAGAGGCCCCCAATCTGGCCCTCTCCTCAGAATGCAAGATCGAACACTGTGAGGCCTGCTTTAGCCACAACTTCTGCACCAAGTGTAAGGAGAACTTGTACCTGCACAAGGGCCGCTGCTATCCTGCCTGTCCCGAGGGCTCTGCGGCTGCCAACGGCACCATGGAGTGCAGCAACCCTGGTAAGGCAGGAAGGCGCGGCAGGCAAATGCTGCGGCCCAGGGTCCAGGACCCCGGAGGAGGGGCGGGCTGGGGGGATCCGGCCAGGGAGAGCACTAAAGACGCCTCTAGCCTGGGGCTGCGGCTGAGAGCAGATGAGAGGGGCTCCCCTGGGGTACCCAGGGCCAGGGGAGGAGACGTGACCCGCTTCTCCTCTTGCTTCCCTCCCCTCCTGCCAGCACAATGTGAAATGAGCGAGTGGTCTCTGTGGGGGCCGTGCTCCAAGAAGAAGAAGCTCTGTGGCTTCCGGAGGGGCTCGGAGGAGCGAACACGGAGGGTGCTGAACGCCCCTGGGGGGGACCACACCGTCTGCTCCGACACCAAGGAGACCCGGAGGTGCACGGGGCGGAGGACGCCCTGCCCGGAGGGGCAGAAGAGGAGGAAGGGCAGCCAGGGCCGGCGGGAGAATGCCAACAGGAACCCCGGGCGGAAGGAGAACAAGGAGGCGGGTGCCGGCGCTCGGAGACGCAAGGACCAGCGGCAGCGGCAGCAGCAAGGGACAGCGGGGCCGGTCACCTCTGCGGGGTCCACCTAG

Related Sequences

bmy_02123T0 Protein

Length: 366 aa      View alignments
>bmy_02123T0
MEVSPTAASHPCSILAVSAEGSQACAKGCELCSEVNGCLKCSPKLFILLERNDIRQVGVCLPSCPPGYFDARNPDMNKCINSPAVIAAPGPCPALCEWAWLGGHRDQGRRPSTAEPEAPNLALSSECKIEHCEACFSHNFCTKCKENLYLHKGRCYPACPEGSAAANGTMECSNPGKAGRRGRQMLRPRVQDPGGGAGWGDPARESTKDASSLGLRLRADERGSPGVPRARGGDVTRFSSCFPPLLPAQCEMSEWSLWGPCSKKKKLCGFRRGSEERTRRVLNAPGGDHTVCSDTKETRRCTGRRTPCPEGQKRRKGSQGRRENANRNPGRKENKEAGAGARRRKDQRQRQQQGTAGPVTSAGST*