Part of scaffold_62 (Scaffold)

For more information consult the page for scaffold_62 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

APOD ENSTTRG00000015844 (Bottlenosed dolphin)

Gene Details

apolipoprotein D

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015009, Bottlenosed dolphin)

Protein Percentage 85.03%
cDNA percentage 89.13%
Ka/Ks Ratio 1.29476 (Ka = 0.0303, Ks = 0.0234)

APOD ENSBTAG00000023600 (Cow)

Gene Details

apolipoprotein D precursor

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000043789, Cow)

Protein Percentage 90.86%
cDNA percentage 94.09%
Ka/Ks Ratio 0.38653 (Ka = 0.0443, Ks = 0.1147)

APOD  (Minke Whale)

Gene Details

apolipoprotein D

External Links

Gene match (Identifier: BACU020371, Minke Whale)

Protein Percentage 96.79%
cDNA percentage 97.5%
Ka/Ks Ratio 0.32243 (Ka = 0.0159, Ks = 0.0493)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 564 bp    Location:274090..259504   Strand:-
>bmy_02294
ATGGTACCAGCGCTGCTGCTGCTGCTTCCTGCCCTGGCTGGACTCTTCGGAGCAGCTGAGGGACAAGCTTTCCATCTCGGGAAATGCCCAAATCCTCCAGTGCAGGAGAACTTTGACGTGAATAAGTATCTTGGAAGATGGTATGAAATTGAGAAGATCCCAGCGAGCTTTGCGAAGGGAAGTTGCATCCAAGCCAACTACTCACTAATGGAAAACGGAAACATCAAAGTGATAAACAGGGAGCTGAGAGCTGATGGAACTGTGAATCAAATTGAAGGTGAAGCCACCCAAGAGAACATCACGGAGCCCGCCAAGTTGGGAGTTAAGTTTTTCTGGTTCATGCCATCAGCTCCATACTGGGTCCTGGCCACCGACTATGAGAACTACGCCCTCGTGTACTCCTGTACCACAATCATCTGGCTTTTTCACATGGATTATGTTTGGCTCTTGGGAAGAGACCCTTATCTCCCTCCAGAAACAGTGACCTATCTCAAAGATATCCTGACCTCTAATAACATTGACATTGAGAAAATAACTGTCACAGATCAGGTGAACTGCCCCTAA

Related Sequences

bmy_02294T0 Protein

Length: 188 aa      View alignments
>bmy_02294T0
MVPALLLLLPALAGLFGAAEGQAFHLGKCPNPPVQENFDVNKYLGRWYEIEKIPASFAKGSCIQANYSLMENGNIKVINRELRADGTVNQIEGEATQENITEPAKLGVKFFWFMPSAPYWVLATDYENYALVYSCTTIIWLFHMDYVWLLGRDPYLPPETVTYLKDILTSNNIDIEKITVTDQVNCP*