Part of scaffold_62 (Scaffold)

For more information consult the page for scaffold_62 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

LRCH3 ENSTTRG00000016289 (Bottlenosed dolphin)

Gene Details

leucine-rich repeats and calponin homology (CH) domain containing 3

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000015438, Bottlenosed dolphin)

Protein Percentage 75.61%
cDNA percentage 76.37%
Ka/Ks Ratio 0.3905 (Ka = 0.0487, Ks = 0.1248)

LRCH3 ENSBTAG00000032839 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000025116, Cow)

Protein Percentage 89.66%
cDNA percentage 90.8%
Ka/Ks Ratio 0.28745 (Ka = 0.064, Ks = 0.2227)

LRCH3  (Minke Whale)

Gene Details

leucine-rich repeats and calponin homology (CH) domain containing 3

External Links

Gene match (Identifier: BACU003822, Minke Whale)

Protein Percentage 99.2%
cDNA percentage 99.33%
Ka/Ks Ratio 0.2828 (Ka = 0.0039, Ks = 0.0137)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 2010 bp    Location:2025785..2097632   Strand:+
>bmy_02325
ATGGAGCTTGCTTCCACTATTTTGATGTTGAATGCCATTCACGATCTGTCACGAAATCGCCTCTCAGAAATTCCCATAGAAGCATGTCACTTCGTTTCTCTTGAGAATCTCAATTTATACCAAAATTGTATTCGGTATATACCAGAGGCAGTTCTAAACTTGCAAGCTCTAACGTTCTTAAATATTAGTCGAAACCAGCTGTCAACATTGCCAGTACACTTGTGTGATTTACCATTGAAAGTCTTAATTGCTAGTAATAACAAATTGGTCTCACTTCCAGAAGAAATTGGACATCTCAGACATTTAACAGAACTTGATGTGAGCTGCAATGAAATTCAAACAATCCCTTCCCAAATTGGTAATTTGGAGGCCTTGCGAGACCTTAATGTAAGAAGAAATCACTTAGTACGTTTGCCTGAAGAGCTAGCAGAGTTGCCTTTGATACGGTTAGACTTTTCCTGCAATAAAATTACAACAATCCCTGTTTGTTATCGGAATCTCAGGCACCTACAGATGATCACCCTAGATAATAATCCACTACAATCTCCTCCTGCACAGATATGTATAAAAGGCAAAATCCACATATTTAAATACCTGAACATACAGGCTTGTAAGATTGCTCCAGATCTGCCAGATTATGATAGGAGACCCATGGGTTTTGGCTCCTGCCACGAAGAACTGTACTCAGGTCGCCCCTATGGAGCCCTTGATTCAGGTTTCAATAGTGTGGACAGTGGTGATAAGAGATGGTCAGGGAATGAACCTACAGATGAATTTTCAGATCTGCCTCTTCGAGTAGCAGAAATTACTAAAGAACAAAGACTACGAAGAGAAAGCCAGTACCAGGAGAATCGCAGCAGTATAGTAGTAACAAATGGTGGAGTGGAACATGATCTGGATCAGATTGACTATATTGACAGCTGTACTGCGGAGGAAGAAGAGGAAGAAGTGAGACCACCCAAGGGCCTGGACTCAGACAGCCTCAGTTCACAGTTTATGGCATATATTGAACAACGGCGAATCTCTCATGAGGGTTCACCAGTAAAGCCAGTACCCATGAGGGAATTTCAAAAAACAGAAGACATGAGAAGATATTCACATCAAAACAGGATTCCAGCTGAGCCATCTTCTCTCTTATCACTATCACCGAGTCATAATCAGTTTTCACATGCAGACTTGGAACTTCATCGGAGAAGAGAACAATTAATAGAACGTACTCGGAGAGAGGCACAACTTGCTGCCCTACAGTATGAGGAGGAGAAAATAAGGACCAAGCAGATTCAAAGAGATGCTGTCCTGGACTTTGTCAAGTGTCCCTTCCCATCCAGAAGGTCTCAGCACACTGATGATAGTGCCTTGTTAGTGTCGCTGTCAGGTGTGAATCAAGTGGGCTGTGCTGCTACCCTGCCTCATTCTTCTGCCTTCAGGCCTCTTAAGAATGATCACAGATCTAATGCTATATCAAGTTCACCTACAACAGAAACAGTTCATCATTCCCCTGCATATTCTTTTCCTGCTGCTATTCAGAGAAACCAGGCCCAGCGCCCTGAAAGCTTCCTTTTCAGAGGAGCTGTCAGGGCAGAAACAAATAAAGGTCATGCGTCACCCCTTCTTTCGTCTTCTGCACCTACCACTGATTTTAAAGATCCGGTAACAAGACAGAATTCAAGACAGAGAGAAGAAGAGCTGGAATTAATAGATCAACTACGGAAACATATTGAGTACCGGTTAAAAGTATCTCTGCCTTGTGATCTTGGAGCAGCTCTAACCGATGGTGTTGTTCTTTGCCATTTGGCCAATCATCCTAAATTAACAATGGCAAAATGCAGACGAAATGTGGAGAATTTCCTAGAAGCTTGCAGAAAAATTGGTGTACCTCAGGAGCAATTATGTTTGCCTCTCCACATTTTAGAAGAGAAAGGTTTGAGCCAGGTTGCGCTGACGGTCCAGGCTCTCCTGGAACTTGCCCCGCCCAAGCAGCAGCAGCAGCACCAGCTATCTGCTGTGTAA

Related Sequences

bmy_02325T0 Protein

Length: 670 aa      View alignments
>bmy_02325T0
MELASTILMLNAIHDLSRNRLSEIPIEACHFVSLENLNLYQNCIRYIPEAVLNLQALTFLNISRNQLSTLPVHLCDLPLKVLIASNNKLVSLPEEIGHLRHLTELDVSCNEIQTIPSQIGNLEALRDLNVRRNHLVRLPEELAELPLIRLDFSCNKITTIPVCYRNLRHLQMITLDNNPLQSPPAQICIKGKIHIFKYLNIQACKIAPDLPDYDRRPMGFGSCHEELYSGRPYGALDSGFNSVDSGDKRWSGNEPTDEFSDLPLRVAEITKEQRLRRESQYQENRSSIVVTNGGVEHDLDQIDYIDSCTAEEEEEEVRPPKGLDSDSLSSQFMAYIEQRRISHEGSPVKPVPMREFQKTEDMRRYSHQNRIPAEPSSLLSLSPSHNQFSHADLELHRRREQLIERTRREAQLAALQYEEEKIRTKQIQRDAVLDFVKCPFPSRRSQHTDDSALLVSLSGVNQVGCAATLPHSSAFRPLKNDHRSNAISSSPTTETVHHSPAYSFPAAIQRNQAQRPESFLFRGAVRAETNKGHASPLLSSSAPTTDFKDPVTRQNSRQREEELELIDQLRKHIEYRLKVSLPCDLGAALTDGVVLCHLANHPKLTMAKCRRNVENFLEACRKIGVPQEQLCLPLHILEEKGLSQVALTVQALLELAPPKQQQQHQLSAV*