Part of scaffold_74 (Scaffold)

For more information consult the page for scaffold_74 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

NUP43 ENSTTRG00000009052 (Bottlenosed dolphin)

Gene Details

nucleoporin 43kDa

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000008583, Bottlenosed dolphin)

Protein Percentage 80.63%
cDNA percentage 85.09%
Ka/Ks Ratio 0.54571 (Ka = 0.1431, Ks = 0.2623)

NUP43 ENSBTAG00000010196 (Cow)

Gene Details

nucleoporin Nup43

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000042789, Cow)

Protein Percentage 77.54%
cDNA percentage 80.58%
Ka/Ks Ratio 0.41678 (Ka = 0.1775, Ks = 0.4259)

NUP43  (Minke Whale)

Gene Details

nucleoporin 43kDa

External Links

Gene match (Identifier: BACU019538, Minke Whale)

Protein Percentage 81.69%
cDNA percentage 85.21%
Ka/Ks Ratio 0.51407 (Ka = 0.1388, Ks = 0.27)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 858 bp    Location:1555675..1543344   Strand:-
>bmy_02564
ATGGAGGAAATTTATGCTAAGTTTGTGTCACAGAAAATCAGCAAGACCCGCTGGCGACCGGTACCTCCGGGGAGCCTGCAGACCACGGAGACTTTCGCCACGGGCTCTTGGGACAATGAGTTTTTTGACCAGGAAAGAATTGTAGCTGCTTCATCAACAGGATGTGTAACAGTTTTCCTTCACCATCCGAATAACCAGACTCTGTCCGTCAGCCAGCAGTGGACAGCAGCTCATCACCACACGGGTCCGGGCAGTCCTTCCTGCAGCAGTGCGCCATGCACAGGTGTTGTGTGCAGCAACCCAGAAATTGTCACAGTTGGAGAAGATGGTCGAATAAATCTCTTCAGAGCTGATCACAAGGAAGCTATAAGAACTATAGACAATGCAGATAGCAGTACACTCCATGCTGTAACCTTCCTTCGAACTCCTGAGATTCTTACAGTAAATTCAATTGGACAGTTAAAAATATGGGATTTTAGACAACAGGGAAATGAGCCCTCTCAGATATTATCACTGACTGGTGACCGAGTGCCACTCCACTGTGTTGATAGACATCCCAACCAGCAGCATGTTGTAGCTACCGGTGGTCAGGATGGAATGTTAAGTATTTGGGATGTTAGACAAGGTACAATGCCCGTGTCTCTACTGAAGGCTCATGAAGCTGAAAGGACTCACCCAGCATACATTCCTTTCCGGAGGAAGTGTGGGAAGTTCACTTTCACCCATCCAACCCAGATCATCTATTTACTTGTTCTGAAGATGGATCTCTCTGGCATTGGGATGCCTCCACAGATGTACCTGAGAAATCATCACTCTTTTACCAAGGTAAAAAGTTTTAATGAAGATTCTTGTGTGTAA

Related Sequences

bmy_02564T0 Protein

Length: 286 aa      View alignments
>bmy_02564T0
MEEIYAKFVSQKISKTRWRPVPPGSLQTTETFATGSWDNEFFDQERIVAASSTGCVTVFLHHPNNQTLSVSQQWTAAHHHTGPGSPSCSSAPCTGVVCSNPEIVTVGEDGRINLFRADHKEAIRTIDNADSSTLHAVTFLRTPEILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAERTHPAYIPFRRKCGKFTFTHPTQIIYLLVLKMDLSGIGMPPQMYLRNHHSFTKVKSFNEDSCV*