Part of scaffold_75 (Scaffold)

For more information consult the page for scaffold_75 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

USE1 ENSBTAG00000011134 (Cow)

Gene Details

vesicle transport protein USE1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000014785, Cow)

Protein Percentage 95.76%
cDNA percentage 94.63%
Ka/Ks Ratio 0.10466 (Ka = 0.0193, Ks = 0.1845)

USE1  (Minke Whale)

Gene Details

unconventional SNARE in the ER 1 homolog (S. cerevisiae)

External Links

Gene match (Identifier: BACU016697, Minke Whale)

Protein Percentage 98.73%
cDNA percentage 99.29%
Ka/Ks Ratio 1.05888 (Ka = 0.0059, Ks = 0.0055)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 750 bp    Location:390755..393810   Strand:+
>bmy_02582
ATGGCGCCGGCGGAAGGGGCGGGGTACCGCTGGGTGGTGATGGCAGCGTCGAGGCTGGAGCTGAACCTGGTGCGGCTGCTGTGCCGCTGCGAGGCGATGGCAGCGGAGAAGCGGGACCCGGACGACTGGCGTCTAGAAAAGTACGTGGGAGCCCTCGAGGACATGCTGCAGGCCCTGAAGGCACAGGCGAGCAAACCGGTCTCCGAGGTAATCAATGAATATTCTCGCAAGGTAGATTTTCTGAAGGGGATGCTGCAGGCAGAGAAGCTGACCTCCTCCTCAGAGAAGGCACTAGCCAACCAGTTCCTGGCCCCTGGCCGAGTACCAACTACAGCCAGGGAACGGGTACCTGCCACGAAGACAGTACACCTACAGTCACGGGCACGGTACACCAGTGAGATGCGGAAGCCTGAACTGGATGTGAGGAAGAGAACTGGGGTGGCAGGGCCCAGGCCAGGGGATGAGAAGCAGTCAGCAGCCGAGCTAGACCTCGTCCTGCAGCGACACCAGAACCTCCAGGAGAAGCTGGCAGAGGAGATGCTAGGCCTGGCACGGAGCCTCAAGACCCACACACTGGCTGCCCAGAGTATGGCCGACCAGAACCTGGAGAAGCTGAAGACAGAATCTGAGCGGCTGGAGCAGCACACACAGAAGTCAGTCAACTGGCTGCTCTGGGCCATGCTTATTATCGTCTGCTTCATCTTCATCAGCATGATYCTCTTCATCCGTATCATGCCCAAACTCAAATAA

Related Sequences

bmy_02582T0 Protein

Length: 250 aa     
>bmy_02582T0
MAPAEGAGYRWVVMAASRLELNLVRLLCRCEAMAAEKRDPDDWRLEKYVGALEDMLQALKAQASKPVSEVINEYSRKVDFLKGMLQAEKLTSSSEKALANQFLAPGRVPTTARERVPATKTVHLQSRARYTSEMRKPELDVRKRTGVAGPRPGDEKQSAAELDLVLQRHQNLQEKLAEEMLGLARSLKTHTLAAQSMADQNLEKLKTESERLEQHTQKSVNWLLWAMLIIVCFIFISMILFIRIMPKLK*