Part of scaffold_75 (Scaffold)

For more information consult the page for scaffold_75 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

USHBP1 ENSTTRG00000003133 (Bottlenosed dolphin)

Gene Details

Usher syndrome 1C binding protein 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000002936, Bottlenosed dolphin)

Protein Percentage 88.86%
cDNA percentage 90.8%
Ka/Ks Ratio 0.6519 (Ka = 0.0734, Ks = 0.1126)

BT.64703 ENSBTAG00000015108 (Cow)

Gene Details

Usher syndrome type-1C protein-binding protein 1

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000020104, Cow)

Protein Percentage 82.82%
cDNA percentage 85.38%
Ka/Ks Ratio 0.39216 (Ka = 0.1222, Ks = 0.3116)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 1188 bp    Location:422124..412868   Strand:-
>bmy_02585
ATGAGTGCCAGGGCCACACGGCCCCGAAGCCGGCGAGGGAGGCACGCTCTGCCCGGTGAGCTGGACCCTGTGGCAGAGAGTTCAGAAGAGGCTGAGGCAGCCAGTGGGAGCTCCGAGCCGGGCCCTGTGCCATCTCAGGATAGCTGCAAGCCAGAGCCGCTGGGCCCTGAGACGGAGGCCAAAGGGCAGGGCCTGGAGAGCAGGACTGACAAAGAAGTTGATGGGGACTCTAGCAGGGGACCTGCTCCAGCCCCCGAGGGGCCCTATGAGCCTGCCCAGGAAGCCCACCAGGCCCCAGAGGCAGCCTCATGGGACAGGGAGAATGTCCCCTCTGGACCCAGAGCCCCTGACGTGTTTCAGACTCTCCAGCAAGCTCTGAGCTCTCTGGAAGCGGCTGCTGCTGCCTGGCGCCACCAGCCCCCAAGATGTCCTGGGCCGTTGGAGGCAAAGGACAGAAGCGAGGGGGGACCAAAGCCCTGCTTGGAGCAGGAGCAGGCTGGGAGCTGCCAGCGGGATGCAGCCCGATTGACTGAAAGGAATGCCTGGCTGCGTTTGGCCCTGGGCAGCCGTGAGGAYGAGCTGATCCGCACACAGAACTCCCTGAAGGCCTTCCAGGCTGAGAAGGAGATGCTGCAGAGAGAGGTCCAGGAGCTGCAGGATTCCCTGCTGAGGCTGAAGCCCTTCCCACCTCCCTCCTGTGACCAAGCAGGCGGCTCGGGTAGTGGTTCCAGCAGCTCTGGGGCTGACGGGGAGACCTGGGGCACTCAGGATCCCTTCTCCCTGGCTCACCCCTTGCTCCGGCGCCTCCAGAGTGATTCCAGCACCCAGATGCTTGGGCCTCTCCCCACCCAGCTCCTTGCCCCCGAGATGCACATCATGGAAGCCCAGATGGAGCATCTCCAGGGGAACATTGAGAAGCTCAAATGCTTCAACCGTCTGCTGTCAGCTGTGCTCCAGGAGTACAAGGGCCGGTGCGAGGGCCTCAGCATGCGGCTGGGCCAGCGGGAGGCTGAGGCCACTGCGTTGCGTCTAGCCTTGCAGTATAGGTCAGTGCACCCTGCCCATGATATCACTGACTGGGCGGGAAATGGGTGTCCTCAGAGGATAGCCCCAATCCCCAGAGAGAGACAGAGCCCTCGCAGGAAAGTACTTTCCCTCACCACGGAAATTAACTTAAGGCAATTTTAG

Related Sequences

bmy_02585T0 Protein

Length: 396 aa      View alignments
>bmy_02585T0
MSARATRPRSRRGRHALPGELDPVAESSEEAEAASGSSEPGPVPSQDSCKPEPLGPETEAKGQGLESRTDKEVDGDSSRGPAPAPEGPYEPAQEAHQAPEAASWDRENVPSGPRAPDVFQTLQQALSSLEAAAAAWRHQPPRCPGPLEAKDRSEGGPKPCLEQEQAGSCQRDAARLTERNAWLRLALGSREDELIRTQNSLKAFQAEKEMLQREVQELQDSLLRLKPFPPPSCDQAGGSGSGSSSSGADGETWGTQDPFSLAHPLLRRLQSDSSTQMLGPLPTQLLAPEMHIMEAQMEHLQGNIEKLKCFNRLLSAVLQEYKGRCEGLSMRLGQREAEATALRLALQYRSVHPAHDITDWAGNGCPQRIAPIPRERQSPRRKVLSLTTEINLRQF*