Sequence detailsbmy_02642 (Coding sequence)

Part of scaffold_75 (SequenceType object (1))

For more information consult the page for scaffold_75 (SequenceType object (1))

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

UPF1ENSTTRG00000011544 (Bottlenosed dolphin)

Gene Details

UPF1 regulator of nonsense transcripts homolog (yeast)

External Links

Gene match(Ensembl Protein ID:ENSTTRP00000010948, Bottlenosed dolphin)

Protein Percentage 96.49%
cDNA percentage 95.5%
Ka/Ks Ratio 0.03521 (Ka = 0.0023, Ks = 0.0666)

UPF1ENSBTAG00000020922 (Cow)

Gene Details

Uncharacterized protein

External Links

Gene match(Ensembl Protein ID:ENSBTAP00000027868, Cow)

Protein Percentage 99.82%
cDNA percentage 95.07%
Ka/Ks Ratio 0.00249 (Ka = 0.0008, Ks = 0.3055)

UPF1 (Minke Whale)

Gene Details

UPF1 regulator of nonsense transcripts homolog (yeast)

External Links

Gene match (Identifier: BACU016643, Minke Whale)

Protein Percentage 99.91%
cDNA percentage 99.23%
Ka/Ks Ratio 0.01138 (Ka = 0.0004, Ks = 0.0354)

Additional orthologs identified in other species via the OPTIC pipeline.

UPF1 (Human)   Upf1 (Mouse)  

Genome Location

Sequence SequenceType object (2)

Length: 3351 bp    Location:1647662..1683134   Strand:+
Raw sequence 
>bmy_02642
ATGAGCGTGGAGGCGTACGGGCCCAGCTCGCAGACGCTCACCTTCCTGGACACCGAGGAGGCCGAGCTGCTCGGCGCCGACACCCAGGGCTCCGAGTTCGAGTTTACCGACTTCACTCTCCCCAGCCAGACGCAGACGCCCCCCGGCGGCCCCGGAGGTGGCGGCGCCGGGGCCCCGGTCTGCGCGGGCCCGGGCGCGGCGGCCGGACAGCTCGACGCGCAGGTCGGTGGACCTGAGGGCATCCTGCAGAACGGGGCTGTGGATGACAGCGTGGCCAAGACTAGCCAGTTGTTGGCCGAGTTGAACTTCGAAGAAGATGAGGAAGATACCTATTACACGAAGGATCTCCCCATACATGCCTGCAGTTACTGCGGAATACACGATCCTGCTTGCGTGGTTTACTGTAATACCAGCAAGAAGTGGTTCTGTAATGGACGTGGAAATACTTCTGGCAGCCACATTGTAAATCACCTCGTGAGGGCAAAATGCAAAGAGGTGACTCTGCACAAGGATGGGCCCCTGGGGGAGACGGTTCTGGAGTGTTACAACTGCGGCTGCCGCAATGTCTTCCTCCTCGGCTTCATCCCCGCCAAGGCTGACTCGGTTGTGGTGCTGCTATGCAGGCAGCCCTGTGCCAGTCAGAGCAGCCTCAAGGACATTAACTGGGACAGCTCGCAGTGGCAGCCCCTGATCCAGGACCGTTGCTTCCTGTCCTGGCTGGTCAAGATCCCTTCTGAGCAGGAGCAGCTGCGGGCGCGGCAGATCACCGCCCAGCAGATCAACAAGCTGGAGGAGCTCTGGAAGGAAAATCCTTCTGCCACCTTGGAGGACCTCGAGAAGCCGGGAGTGGATGAGGAGCCGCAGCATGTCCTCCTGCGGTATGAGGATGCCTACCAGTACCAGAACATATTCGGTCCTCTGGTCAAGCTGGAGGCTGACTACGATAAGAAACTGAAAGAGTCGCAGACTCAAGATAACATCACGGTCAGGTGGGACCTGGGCCTTAACAAGAAGAGAATCGCCTACTTCACTTTGCCCAAGACTGACTCTGACATGAGGCTCATGCAAGGGGATGAGATATGCCTGCGGTACAAAGGGGACCTGGCGCCCCTATGGAAAGGGATCGGCCACGTCATCAAGGTCCCTGATAATTATGGCGACGAGATCGCTATTGAGCTTCGGAGCAGTGTGGGTGCACCCGTGGAGGTGACTCATAACTTCCAGGTGGATTTCGTGTGGAAGTCAACCTCATTCGACAGGATGCAGAGTGCGTTGAAAACCTTTGCTGTGGACGAGACCTCCGTATCGGGCTACATCTACCACAAACTGCTCGGCCACGAGGTGGAGGATGTGATCATCAAGTGCCAGCTGCCCAAGCGCTTCACGGCGCAGGGGCTCCCTGACCTCAACCACTCTCAGGTTTACGCCGTGAAGACTGTGCTGCAGAGACCACTGAGTCTGATCCAGGGCCCGCCGGGCACAGGAAAGACGGTGACCTCAGCCACCATTGTCTACCACCTGGCTCGGCAAGGCAATGGGCCCGTGCTTGTCTGTGCCCCAAGCAACATAGCCGTGGATCAGCTGACTGAGAAGATCCACCAGACTGGGCTGAAAGTCGTGCGGCTCTGTGCCAAGAGCCGAGAGGCCATCGACTCCCCGGTGTCGTTCTTGGCCCTGCACAACCAGATCAGGAACATGGACAGCATGCCGGAGCTCCAGAAGCTGCAGCAGCTCAAGGATGAGACCGGCGAGCTGTCGTCTGCGGACGAAAAGCGGTACCGGGCCCTGAAGCGCACTGCCGAGAGAGAGCTGCTCATGAATGCAGATGTCATCTGCTGCACGTGTGTGGGCGCCGGGGACCCGAGGCTCGCCAAGATGCAGTTCCGATCCATTTTAATCGACGAGAGCACCCAGGCCACCGAGCCAGAGTGCATGGTCCCTGTGGTCCTTGGAGCCAAGCAGCTGATCCTCGTGGGCGACCACTGCCAGCTGGGCCCCGTGGTGATGTGCAAGAAGGCGGCCAAGGCCGGGCTGTCCCAGTCGCTCTTTGAGCGCCTGGTGGTGCTGGGCATCCGTCCCATCCGCCTCCAGGTCCAGTATCGGATGCATCCTGCGCTCAGTGCCTTCCCATCCAACATCTTCTATGAGGGCTCTCTTCAGAATGGTGTCACTGCAGCGGATCGTGTGAAGAAGGGATTTGACTTCCAGTGGCCCCAACCGGATAAACCGATGTTCTTCTACGTGACCCAGGGCCAAGAGGAGATTGCCAGCTCAGGCACCTCCTACCTAAACAGGACGGAGGCTGCAAATGTGGAGAAGATCACCACGAAGCTGCTGAAGGCGGGCGCCAAGCCAGATCAGATCGGCATCATCACGCCCTACGAGGGCCAGCGCTCCTACCTGGTGCAGTACATGCAGTTCAGTGGCTCCCTGCACACCAAGCTCTACCAGGAGGTGGAGATCGCCAGCGTGGATGCGTTCCAGGGCCGCGAGAAGGACTTCATCATCCTCTCCTGTGTGCGGGCGAATGAGCACCAAGGCATTGGCTTTTTAAACGACCCCAGAAGGCTTAATGTGGCCTTGACCAGAGCACGATATGGGGTCATTATTGTGGGCAACCCGAAGGCCCTGTCCAAGCAGCCGCTCTGGAACCACCTGCTGAACTACTACAAGGAGCAGAAGGTGCTGGTGGAGGGGCCGCTGAACAACCTGCGGGAGAGCCTCATGCAGTTCAGCAAGCCCAGGAAGCTGGTCAACACCATCAACCCGGGAGCCCGCTTCATGACAACTGCCATGTATGATGCCCGGGAGGCCATCATCCCAGGATCGGTCTATGACCGGAGCAGCCAGGGCCGGCCCTCGAACATGTACTTCCAGACCCATGACCAGATTGGCATGATCAGTGCTGGCCCCAGCCACGTGGCTGCCATGAACATTCCCATCCCCTTCAACCTGGTCATGCCGCCCATGCCGCCACCGGGGTATTTTGGACAAGCTAACGGGCCAGCCGCAGGCCGGGGCACCCCAAAAGGCAAGACTGGTCGTGGGGGACGCCAGAAGAACCGCTTTGGGCTTCCTGGGCCCAGCCAGACGAATCTCCCCAATAGCCAGGCCAGCCAGGATGTGGCGTCACAGCCCTTCTCACAGGGCGCGCTGACCCAGGGCTACATCTCCATGAGCCAGCCCTCCCAGATGAGCCAGCCCGGCCTCTCCCAGCCTGAGCTGTCCCAGGACAGTTACCTTGGAGATGAGTTTAAGTCACAGATTGATGTGGCGCTGTCGCAAGACTCCACGTACCAGGGGGAGCGGGCGTACCAGCACGGCGGAGTGACGGGGCTGTCCCAGTATTAG

Related Sequences

bmy_02642T0 SequenceType object (3)

Length: 1117 aa      View alignments
>bmy_02642T0
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGGPGGGGAGAPVCAGPGAAAGQLDAQVGGPEGILQNGAVDDSVAKTSQLLAELNFEEDEEDTYYTKDLPIHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNMYFQTHDQIGMISAGPSHVAAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGTPKGKTGRGGRQKNRFGLPGPSQTNLPNSQASQDVASQPFSQGALTQGYISMSQPSQMSQPGLSQPELSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY*