Part of scaffold_78 (Scaffold)

For more information consult the page for scaffold_78 (Scaffold)

Potential Gene Matches

The following genes have been identified as possible orthologs in this organism.

SMNDC1 ENSTTRG00000007896 (Bottlenosed dolphin)

Gene Details

survival motor neuron domain containing 1

External Links

Gene match (Ensembl Protein ID: ENSTTRP00000007470, Bottlenosed dolphin)

Protein Percentage 79.83%
cDNA percentage 79.83%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.0121)

SMNDC1 ENSBTAG00000000551 (Cow)

Gene Details

survival of motor neuron-related-splicing factor 30

External Links

Gene match (Ensembl Protein ID: ENSBTAP00000000722, Cow)

Protein Percentage 100.0%
cDNA percentage 97.62%
Ka/Ks Ratio 0.001 (Ka = 0.0001, Ks = 0.1115)

SMNDC1  (Minke Whale)

Gene Details

survival motor neuron domain containing 1

External Links

Gene match (Identifier: BACU004635, Minke Whale)

Protein Percentage 100.0%
cDNA percentage 99.86%
Ka/Ks Ratio 0.001 (Ka = 0.0, Ks = 0.004)

Additional orthologs identified in other species via the OPTIC pipeline.

Genome Location

Sequence Coding sequence

Length: 792 bp    Location:889287..834458   Strand:-
>bmy_02804
ATGCTCATTGGGAGAGTGTGGCTGGTTCATCAGAGGGCCCCTGGTCCATACCTGGCAAGCCGCAGCATCCGATGGATGTCAGAGGATCTAGCAAAGCAACTGGCAAGCTACAAAGCTCAACTCCAGCAAGTTGAAGCTGCGCTGTCTGGAAATGGAGAAAACGAAGATTTGCTAAAATTAAAGAAAGATTTGCAAGAAGTTATAGAACTAACCAAAGACCTTCTGTCAACTCAACCTTCTGAAACGCTGGCAAGTTCAGACAATTTTGCTTCTACTCAGCCCACTCATTCTTGGAAAGTAGGAGACAAGTGTATGGCAATCTGGAGTGAAGATGGACAGTGTTATGAAGCGGAGATTGAGGAGATAGATGAAGAAAACGGCACCGCTGCAATCACTTTTGCTGGCTATGGCAATGCTGAAGTGACTCCACTGTTGAACCTCAAGCCTGTAGAAGAAGGAAGGAAGGCAAAGGAGGACAGTGGCAACAAACCCATGTCAAAAAAAGAAATGATTGCCCAGCAGCGTGAATATAAAAAGAAGAAAGCTTTGAAAAAAGCACAGAGAATAAAAGAACTTGAACAAGAAAGAGAGGACCAGAAGGTGAAATGGCAGCAGTTCAACAACAGAGCCTATTCTAAAAACAAAAAAGGCCAGGTAAAGAGGAGTATTTTTGCTTCACCTGAGAGTGTAACTGGCAAAGTTGGAGTAGGAACTTGTGGAATTGCTGATAAACCTATGACACAGTATCAAGATACCTCTAAATACAATGTTAGGCATTTGATGCCTCAATAA

Related Sequences

bmy_02804T0 Protein

Length: 264 aa      View alignments
>bmy_02804T0
MLIGRVWLVHQRAPGPYLASRSIRWMSEDLAKQLASYKAQLQQVEAALSGNGENEDLLKLKKDLQEVIELTKDLLSTQPSETLASSDNFASTQPTHSWKVGDKCMAIWSEDGQCYEAEIEEIDEENGTAAITFAGYGNAEVTPLLNLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQFNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ*